Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02770 ATGGCTTCTACTTCAAGGAGATTACCAACACCTCAAGAAAGAGAAAAATGGAAACACATTTTTGACACTATCATAGATCCAAATCTGGCACCAATTGAAATCCCTCAACCTTTTTTCCACAAAATGAAAGAGAATACTTTTTGGATGAGAATTTACCCTCCACTTCAACCTGTGAAAACTGAATTTCCACCTGAGGCAACTTTGAAAAGGAAACATCAAAAGGAGATATTAGGCAATAGTGATGATCAAGATGAGCCAAATTCCAATAGCAAACGACGACACCCAAATTTGAAGATTCGTGCATCTCAGAAAAAAAAAGATTTGAAATCCACACCAAAGAAATCAAACAAACAACATCAGTATAAGCATTCAAGGAGACCAGCCATTGTAAAGCTGAATCTTGATGGAAGCTATGGTTGGGAGAAGATTGTAACTAGAGCTGGTGCAGCCGATGCAAGACCTCAAGTCATGCACTTTCCTAAGCAATTTTCTAGATTGTTTTTGGGAAAAAAACAAAACAAAGTGTTGGTCCAAGCTGAAGCAGGAGATACATTCTCTTGCAAGATTATGACAGCGACAAGGAATAGAGATGAAAAATACATATCAAAAGAGTGGACCAAATTTGTGAAAAGAAACAACCTCCAAGTTGGAGACAAGCTCATTTTCACTCTTCAAAACCAACCAACAAAACTCCTGATTCAGATCATCCGTTGTAGTGTGCACGACTGA 729 0.38 MASTSRRLPTPQEREKWKHIFDTIIDPNLAPIEIPQPFFHKMKENTFWMRIYPPLQPVKTEFPPEATLKRKHQKEILGNSDDQDEPNSNSKRRHPNLKIRASQKKKDLKSTPKKSNKQHQYKHSRRPAIVKLNLDGSYGWEKIVTRAGAADARPQVMHFPKQFSRLFLGKKQNKVLVQAEAGDTFSCKIMTATRNRDEKYISKEWTKFVKRNNLQVGDKLIFTLQNQPTKLLIQIIRCSVHD 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02770 242 MobiDBLite consensus disorder prediction 71 92 - -
Trre13g02770 242 Pfam B3 DNA binding domain 157 237 IPR003340 GO:0003677
Trre13g02770 242 CDD B3_DNA 157 237 IPR003340 GO:0003677
Trre13g02770 242 SMART B3_2 141 239 IPR003340 GO:0003677
Trre13g02770 242 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 95 238 IPR044837 -
Trre13g02770 242 MobiDBLite consensus disorder prediction 110 126 - -
Trre13g02770 242 MobiDBLite consensus disorder prediction 71 126 - -
Trre13g02770 242 ProSiteProfiles B3 DNA-binding domain profile. 142 239 IPR003340 GO:0003677
Trre13g02770 242 SUPERFAMILY DNA-binding pseudobarrel domain 153 237 IPR015300 -
Trre13g02770 242 Gene3D - 87 239 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02770 Trre-Chr13 26691600 26693367 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g02770 B3 5.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02770 - K13193 tpra:123904760 100.138