Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02744 ATGGCTGACGGTGAATCAGACAAGAACATTCAGATATGGAAGATAAAAAATTTGATCAAAGCATTGGAAGCTGCAAGAGGTAATGGTACTAGCATGATTTCTCTGATAATGCCTCCACGTGATCAAATATCTCGTGTCACTAAGATGTTGGGAGATGAATTTGGAACTGCTTCAAATATCAAAAGTAGGGTTAACCGACAATCTGTGCTTGGAGCCATTACTTCTGCTCAACAGAGGTTGAAACTATATAACAAGGTTCCTCCAAATGGATTGGTCCTTTATACTGGTACCATTCTCACTGATGACGGCAAGGAAAAGAAAGTGACAATTGATTTTGAACCTTTCAGACCAATCAATGTATCACTGTATCTGTGCGATAACAAATTTCATACAGAAGCTCTAAATGAACTTCTAGAATCGGATGACAAGTTTGGTTTTATTGTTATGGATGGAAATGGAACCCTTTTTGGAACTTTAAGTGGAAATACTCGTGAGGTGCTTCATAAATTTACTGTCGATCTACCAAAGAAACATGGTAGAGGAGGGCAGTCAGCTTTGCGTTTTGCTCGTCTTCGCATGGAAAAACGACACAATTATGTTAGGAAGACTGCAGAGCTTGCTACTCAGCATTTCATCAACCCTGCTACTAGTCAGCCTAATGTTGCTGGACTCATACTTGCTGGTTCGGCTGACTTCAAGACTGAGCTGAGCCAGTCAGATATGTTTGATCCTCGTTTGCAAGCAAAAATATTGAACGTGGTTGATGTTTCCTATGGTGGGGAAAATGGCTTTAACCAAGCTATTGAATTATCTGCTGAGATTCTATCTAATGTGAAGTTCATCCAAGAGAAACGCTTAATAGGAAAATATTTCGAGGAGATAAGTCAAGAAACTGGGAAATATGTTTATGGAGTTGATGACACATTGAAGGCCCTAGAGATGGGTGCTGTTGAAACACTCATTGTATGGGAGAATTTGGATATTAATAGGTATATTCTGAAAAATGCTACCACTGGTGAGATAGTAATAAAGCATTTGAAGAAGGAACAAGAAGCTGATCAAAGCAACTTCCGTGATGCGGATACCTCTGCAGACTTGGAGGTTCAGGAGAAGATGCCATTACTTGAGTGGTTTGCGAATGAGTACAAAAAATTCGGATGCTCGCTGGAATTTGTGACCAACAAATCTCAAGAAGGGTCACAGTTTTGCAGGGGTTTTGGTGGTATTGGAGGTATGCTTCGCTACCAGCTTGATATCAGATCATTTGATGAGTTATCTGATGACGATGGTGGAGTGTACGAGGATTCCGATTAA 1314 0.4018 MADGESDKNIQIWKIKNLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTILTDDGKEKKVTIDFEPFRPINVSLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQHFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQETGKYVYGVDDTLKALEMGAVETLIVWENLDINRYILKNATTGEIVIKHLKKEQEADQSNFRDADTSADLEVQEKMPLLEWFANEYKKFGCSLEFVTNKSQEGSQFCRGFGGIGGMLRYQLDIRSFDELSDDDGGVYEDSD 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02744 437 FunFam Peptide chain release factor subunit 1 278 437 - -
Trre13g02744 437 Pfam eRF1 domain 1 24 137 IPR005140 -
Trre13g02744 437 Pfam eRF1 domain 2 143 276 IPR005141 -
Trre13g02744 437 Pfam eRF1 domain 3 280 417 IPR005142 -
Trre13g02744 437 FunFam Eukaryotic peptide chain release factor subunit 1 135 276 - -
Trre13g02744 437 Gene3D eRF1 domain 2 135 276 IPR042226 -
Trre13g02744 437 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 139 IPR024049 -
Trre13g02744 437 SUPERFAMILY Translational machinery components 141 275 - -
Trre13g02744 437 Gene3D - 278 437 IPR029064 -
Trre13g02744 437 NCBIfam peptide chain release factor aRF-1 12 416 IPR004403 GO:0003747|GO:0006415
Trre13g02744 437 SUPERFAMILY L30e-like 277 419 IPR029064 -
Trre13g02744 437 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 4 428 IPR004403 GO:0003747|GO:0006415
Trre13g02744 437 Gene3D eRF1 domain 1 1 134 IPR024049 -
Trre13g02744 437 SMART eRF1_1_2 3 139 IPR005140 -
Trre13g02744 437 FunFam Eukaryotic peptide chain release factor subunit 1 1 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02744 Trre-Chr13 26306271 26307584 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02744 1 437 Eukaryotic Initiation Factors Gene Family AT3G26618 90.618 0.0 824