Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02715 ATGCCTATGCATTTTGATTATTACAGATTACCAACTGCGGAGGAAAGAGAAAAATGGAAACACATTTTCGACACTACCATAGATCCAAATATGGCATCAATTGAAATTCCACAACATTTTTTTGAAAAAATGAAATGTCAATTTCAAAACCACCAATTTGGCTGGATCAGAGGTCCCAAATTTACCAAATTTATGGTCAGATATCACCAAACTAATAGGAGTATCAAACTTACGTCTGGTGTGTGTGTTTCTAAATATTTTGGATTTGTTATACCAACAAGAGTCACCCTGAGTTATGTGATCCAAGAAAATACTTTTTGGATGCGAATTTATCCTCCAATTAAAGCTGTGAAGACAGAATATTCACTAGAAGTACATCAAAACAACAATGCATTTGCTGGAACTATCAACCAAAGAATGATACCAACACCAAACAAACGAGCAAATTTCAAGGCAACTTTGAAAAGAAAACAACCAAAGGAAATCATTTTTAATGATGATGATCAAAGTCAGCCAAAGTCAAAGAGGTGCAAAACAACTAAAACCACCAAACAACCTGTCCATTTGAAGTCCACTGCTGCATCTCAGAAACAACAAAAGTTGAAGGCCACCCTAAAGCCATTGAGTAAACAACAACAGGATAAGTTTAAAAGGCCTGCATCTCAGAAAAAATGTGCTTCCAAGTCCACTCCAAACAAACTTTCCAAACAACACCAGACAAAAAAAGCTTCAAAGGACAATACAATGAAATGCTCCAAACAACACCAACCTAGGTCTTATTCAAGAAAACCAATAATTGCAAAATTGAATGCTGATGGGAGCTATGTCTGGGAAAAAACTATAACTGCAGCTGCTTCTGTGAATGCAAAACGTCAAGTGATGCATTTTCCGAAACAAATTGGACGATTTGTTCTTGGTATCAAACAAAAGACAATCTTAGTGCAAGCTGAAACACGAGATTCATTCTCCTGCAAACTGATCACAGCAAAAAGGAACAAAGCTGAAAAATACATATCCAAAGAATGGAGTCAATTTGTGAGAAGAACCAAATTGCAAGTTGGAGACAAAGTGCTGTTCAAGCTTCAAAATCCCCCAACAAAACTCCTCATTCAGACAACCCGATCCAAAGCAAGAACCTGA 1140 0.3667 MPMHFDYYRLPTAEEREKWKHIFDTTIDPNMASIEIPQHFFEKMKCQFQNHQFGWIRGPKFTKFMVRYHQTNRSIKLTSGVCVSKYFGFVIPTRVTLSYVIQENTFWMRIYPPIKAVKTEYSLEVHQNNNAFAGTINQRMIPTPNKRANFKATLKRKQPKEIIFNDDDQSQPKSKRCKTTKTTKQPVHLKSTAASQKQQKLKATLKPLSKQQQDKFKRPASQKKCASKSTPNKLSKQHQTKKASKDNTMKCSKQHQPRSYSRKPIIAKLNADGSYVWEKTITAAASVNAKRQVMHFPKQIGRFVLGIKQKTILVQAETRDSFSCKLITAKRNKAEKYISKEWSQFVRRTKLQVGDKVLFKLQNPPTKLLIQTTRSKART 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02715 379 MobiDBLite consensus disorder prediction 184 210 - -
Trre13g02715 379 SUPERFAMILY DNA-binding pseudobarrel domain 287 369 IPR015300 -
Trre13g02715 379 MobiDBLite consensus disorder prediction 154 175 - -
Trre13g02715 379 Pfam B3 DNA binding domain 286 373 IPR003340 GO:0003677
Trre13g02715 379 Gene3D - 203 379 IPR015300 -
Trre13g02715 379 MobiDBLite consensus disorder prediction 223 237 - -
Trre13g02715 379 MobiDBLite consensus disorder prediction 154 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02715 Trre-Chr13 25810200 25812210 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g02715 B3 2.3e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02715 - K26404 tpra:123904760 201.83