Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02708 ATGGGATCAAAATTAGCTGACATTCTCAAAAGAAATAACAAAGGATGGTTTGAAACTGTTCATGTTGAAACCCAGAGTCTTGGGGAACTAGATCCTTTTTTTGTAGCAACCTTCTTTGAAGAGCTGGGGATTCATTGGGAAATATTTGATGGAAAAGGGAAGCAGCATAACGTTGAGTTTAATGGCTCACCAACCGAACCACTTTTAATTTCAGGTTGGGGGAGATTGAGACTATATTATTCTTGGACTGGACATCAAAAACTTTGTTTGTTTTACTATGGTAGAAACCAATTCTTGATGGTGGAATCTGACAATTCTGATCATGTCATCCCATCATTTTTCTCGGCATTCCATAGTTTTAGCAATTTCATTGGAAAATACCAAACATTTTTTATGACCATTGGTGATCAAGATGTCAATTCACGGCGTGTGATTGTTGACAAAGAATTTGGAAAATTTCTAACTCAATCAATCCATGGCAAAGTGAAATTCAGCGGACCTTTAGCTAACATTGTGACCGTCAACCTGATTATCGATTACGACAATCCTCTACGTGTTATGTTTGGAGAAGGTTGGACATCTTTTTGTCAACTTAATCAAATTGTCAAGGGAAATCGACTAAGCTTCAAGGTTAATAGGGACATGACATTGACAAGGTCTGCTATCGAAAAACAAATAAGTCCAAGTTTTAGAACAATAATTGATCCACACAAGGAACAATTCCAACTTTCACCTAAATTCAAATCTGAATGGGGTGATAAGATAGTACAGGAACCGGTTGCTTTTTTAGTACATCCATCTGGAAACACAGCTTGGCTCGAATTTCACGTTCAGGACGAACAATGTTACATGACTGGCGGTAAGATTGCTTCACTTCTATTTGGAATTAGGGAACCAACTGAAGTCATTCTTACCTATCATCAAGAGGACACAACCATAACTTTAAGAAAAGTATCAAATGTTGAACAAGTTAACAATCAAACAATGAAGCCATTTGAAAGAAACACTTATACCTTACATCAATTTGATGATGATGGCATGTTTGGTTGGGAACAAACAGTCACCAAAGCTCTTGCAAGTGAAACAAAAAATCAAGTTCTGCGCATACCACCAAATTGTGGTCAATTTACACTTAGAGGAAAAAACAGCATAATCATTAACACACTTCACAATTTGGACGGATCAAAGTGGACAATCAACACTTATACCAGAAAGAATGGAAGGAAGGAAAAATCATTTACCGAAGGCTGGTATGCTTTCAAGAAAGCGAACAATCTTGCCGAAGGAGACAAACTGCGATTAAAGCTTTCAGATCCACCCCATGTTATGACTGTGGAGATTGTCCGCGCCAACAATCCAGCTTAG 1365 0.3773 MGSKLADILKRNNKGWFETVHVETQSLGELDPFFVATFFEELGIHWEIFDGKGKQHNVEFNGSPTEPLLISGWGRLRLYYSWTGHQKLCLFYYGRNQFLMVESDNSDHVIPSFFSAFHSFSNFIGKYQTFFMTIGDQDVNSRRVIVDKEFGKFLTQSIHGKVKFSGPLANIVTVNLIIDYDNPLRVMFGEGWTSFCQLNQIVKGNRLSFKVNRDMTLTRSAIEKQISPSFRTIIDPHKEQFQLSPKFKSEWGDKIVQEPVAFLVHPSGNTAWLEFHVQDEQCYMTGGKIASLLFGIREPTEVILTYHQEDTTITLRKVSNVEQVNNQTMKPFERNTYTLHQFDDDGMFGWEQTVTKALASETKNQVLRIPPNCGQFTLRGKNSIIINTLHNLDGSKWTINTYTRKNGRKEKSFTEGWYAFKKANNLAEGDKLRLKLSDPPHVMTVEIVRANNPA 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02708 454 SUPERFAMILY DNA-binding pseudobarrel domain 355 449 IPR015300 -
Trre13g02708 454 CDD B3_DNA 367 449 IPR003340 GO:0003677
Trre13g02708 454 ProSiteProfiles B3 DNA-binding domain profile. 388 451 IPR003340 GO:0003677
Trre13g02708 454 SMART B3_2 353 451 IPR003340 GO:0003677
Trre13g02708 454 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 141 451 IPR044837 -
Trre13g02708 454 Gene3D - 125 227 IPR015300 -
Trre13g02708 454 Pfam B3 DNA binding domain 359 450 IPR003340 GO:0003677
Trre13g02708 454 Gene3D - 334 452 IPR015300 -
Trre13g02708 454 SUPERFAMILY DNA-binding pseudobarrel domain 127 219 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02708 Trre-Chr13 25737605 25741030 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre13g02708 B3 1.2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02708 - K24132 tpra:123886203 187.193