Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02691 ATGATAAGTGCAATAAAAGCAGCAATTGGAGATGGAGTATTAACTTTCATGTGGGTTTTTTGTTCATCCTTGTTGGGTATAGTTTCTAGTGCTATAACAAAATCTCTTGATCTTCAAAATGTTTCATATAATGGTTTACCTTACCCTTCTTTAATAATTACCACTACTCTTGTTTTTCTTCTTGTTTTTTTGTTTACCATCATTGGTAATTCAATGGGTGGTGCTAGTTTTAATCCCACTGGTACTGTTGCCTTTTACTTCCTTGGTCATGGTTCTGATACACTCATCTCAATGGCTCTCCGTTTCCCTGCTCAGGCGTTTGGTGCTGCGGGTGGTGCAATGGCAATTGCCGAGTTGATCAATCCGAAATACAGGCACATGATCGGGGGTCCTTCTTTGAAAGTGGACTTGCATACTGGGGCTGCTGCTGAATTGATTTTGACATTTGTGATTACCTTTGCTGTTCTCTGCATATTCCTCAAGGGCCCTCGTAGTGATTTATTGAAGATTTGGTTGCTCGCCATGTCAACTGTCACTTTGGTAGTGCTTGGCTCTGCTTACACTGGTCCATCCATGAACCCAGCCAATGCGTTTGGTTGGGCATACTTAAACAACTGGCACAACACATGGGACCAATTCTACGTATACTGGATTTGTCCCTTCGCCGGAGCAATATCGGCTGCTTGGATATTTCGTGCTATCTTCCCTCCACCAGTTAAACAGAAAAAAAGCATGAAGAAACAAGAATGA 750 0.42 MISAIKAAIGDGVLTFMWVFCSSLLGIVSSAITKSLDLQNVSYNGLPYPSLIITTTLVFLLVFLFTIIGNSMGGASFNPTGTVAFYFLGHGSDTLISMALRFPAQAFGAAGGAMAIAELINPKYRHMIGGPSLKVDLHTGAAAELILTFVITFAVLCIFLKGPRSDLLKIWLLAMSTVTLVVLGSAYTGPSMNPANAFGWAYLNNWHNTWDQFYVYWICPFAGAISAAWIFRAIFPPPVKQKKSMKKQE 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02691 249 FunFam Aquaporin SIP1-1 2 248 - -
Trre13g02691 249 Gene3D Glycerol uptake facilitator protein. 2 247 IPR023271 -
Trre13g02691 249 SUPERFAMILY Aquaporin-like 4 241 IPR023271 -
Trre13g02691 249 Pfam Major intrinsic protein 3 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g02691 249 PANTHER AQUAPORIN SIP1-1 4 244 IPR044222 GO:0015250
Trre13g02691 249 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g02691 249 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g02691 249 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g02691 249 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g02691 249 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre13g02691 249 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02691 Trre-Chr13 25445111 25448809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02691 1 235 Major Intrinsic Protein MIP AT3G04090 57.021 2.31e-78 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02691 K09875 - gmx:100792787 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02691 13 25445111 25448809 Trre13g02691 13 25445111 25448809 ECH