Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02690 ATGCTCAAGCGTCCTAACCGTCAGGAGTCAATCTCCGATAAGATCTATAGATTCCGAGGAACTCTTCTCGTTGTCTCGATCCCTATCCTTCTCATCACATTCGTTCTCTATATGATGCCTTCCAGTTCCAATTATGAATCTGTCGGAGATTATGCCCTCATTAGTCGCAAAATTTCGCCGGATAAAAAATCCGGTACCTCTTATGCTGTCATTTTCGATGCTGGTAGCTCCGGCAGCCGCGTTCATGTTTTCCATTTCGATCATAATCTAGATCTTGTTCACATTGGCAAAGATCTCGAACTTTTCGAGCAGATTAAACCAGGTTTGAGTGCTTATGCTCAGAATCCGCAGAAAGCAGCAGAATCTTTGGTTTCACTTTTAGAGAAAGCGGAGAATGTTGTTCCTCGCGAATTGCGATCAAAGACACCGGTTCGAGTTGGGGCTACTGCCGGTTTGAGGGCTTTGGAAGGGGATGCATCTGATAAGATATTGCAAGCGGTAAGGGATTTGCTTAAGCACAGAAGCCCATTGAAATCTGACGCTGATGCGGTTACGGTGCTGGATGGAACACAAGAAGGTGCTTATCAGTGGGTTACTATTAACTATCTATTGGGAAACTTGGGAAAAGATTATTCAAAGACTGTCGGGGTAGTTGATCTTGGAGGTGGATCTGTTCAAATGGCTTATGCCATCTCTGAGTCTGATGCTGCCATGGCTCCACAAGTAACGGATGGAGAGGATCCATATGTCAAGGAGATGTTCCTGAGGGGAAGAAAATATTACCTCTATGTTCACAGTTACTTGCGCTATGGTTTACTAGCAGCTCGCGCAGAGATTTTAAAGGCTTCTGGTGATGCTGACAACCCGTGTATCTTATCTGGTTACGATGGATCTTACAACTATGGAGGAAAGTCATTTAAGGCTTCATCCTCTGGAGCAAGCTTAGATGATTGCAAAAGCGTGGCTCTAAAGGCTCTCAAAGTCAATGAGTCAACATGTACACATATGAAGTGCACTTTTGGTGGGATATGGAATGGTGGAGGTGGGGATGGACAGAAAAACCTATTTGTTGCCTCATTTTTCTTTGACCGGGCTGCTGAGGCTGGTTTTGCTAATCCAAACTCACCAGTTGCAATAGTTCGTCCCTCGGATTTTGAGGATGCTGCCAAGCAGGCTTGTCAAACAAAACTCGAGAATGGAAAATCCACGTATCCACGAGTTGAGGAGGGGAACCTTCCATATCTTTGCATGGATCTTGTATACCAGTATACATTGCTTGTTGATGGATTTGGCATATTACCATGGCAAGAGATTACATTGGTAAAGAAAGTTAAATACGAAGATGCCCTTGTTGAGGCAGCTTGGCCACTCGGAAGTGCCATTGAAGCTGTATCATCTACGTAA 1404 0.4444 MLKRPNRQESISDKIYRFRGTLLVVSIPILLITFVLYMMPSSSNYESVGDYALISRKISPDKKSGTSYAVIFDAGSSGSRVHVFHFDHNLDLVHIGKDLELFEQIKPGLSAYAQNPQKAAESLVSLLEKAENVVPRELRSKTPVRVGATAGLRALEGDASDKILQAVRDLLKHRSPLKSDADAVTVLDGTQEGAYQWVTINYLLGNLGKDYSKTVGVVDLGGGSVQMAYAISESDAAMAPQVTDGEDPYVKEMFLRGRKYYLYVHSYLRYGLLAARAEILKASGDADNPCILSGYDGSYNYGGKSFKASSSGASLDDCKSVALKALKVNESTCTHMKCTFGGIWNGGGGDGQKNLFVASFFFDRAAEAGFANPNSPVAIVRPSDFEDAAKQACQTKLENGKSTYPRVEEGNLPYLCMDLVYQYTLLVDGFGILPWQEITLVKKVKYEDALVEAAWPLGSAIEAVSST 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02690 467 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 187 202 IPR000407 GO:0016787
Trre13g02690 467 Gene3D Exopolyphosphatase. Domain 2 188 445 - -
Trre13g02690 467 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 11 466 IPR000407 GO:0016787
Trre13g02690 467 CDD NBD_sugar-kinase_HSP70_actin 70 229 - -
Trre13g02690 467 FunFam Apyrase 1 188 445 - -
Trre13g02690 467 Gene3D - 68 461 - -
Trre13g02690 467 Pfam GDA1/CD39 (nucleoside phosphatase) family 64 466 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02690 Trre-Chr13 25437896 25442725 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02690 7 466 Calmodulin-binding Proteins AT3G04080 70.779 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02690 K14641 - gmx:100786073 825.469