Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02686 ATGGAGTTCCTAATTAAACTCATCACATTTCTACTCTTCTTAATACCTACAATCACTTCCTCACAATATTTAGGAAACAACCTATTCACTAATCGAAAGATTTTCTTAAAACAAGAAACAATTACCTCGTACGCTGTCGTATTTGATGCTGGTAGCACCGGTAGCCGTGTTCATGTCTACCATTTTGACCAGAACTTAGATCTTCTTCATATTGGCAAAGATGTTGAGTTTTATAATAAGATTCAACCTGGTTTGAGTGCATATGCGGATAATCCAGAACAAGCTGCAAAATCTTTGATTCCACTTTTAGAGCAAGCAGAAAATGTTGTCCCGGAGGATTTTCATTCCAAGACACCCATTAGACTTGGGGCAACTGCAGGTTTAAGACTTTTAGATGGAGATGCTTCTGAAAAGATATTACAAGCGGTAAGGGATATGCTGAACAACAAAAGTACCTTCAACATTCAACCTGATGCAGTATCTATTATTGATGGAACCCAAGAAGGTTCTTATCTATGGGTGACAATAAACTATGTATTGGGGAATTTGGGGAAAAGATTCACAAATACAGTGGGAGTAATTGACCTTGGAGGTGGATCAGTTCAAATGGCATATGCTGTATCAAAGAAAACAGCAAGAAATGCTCCAAAAGTTACTGATGGAGAGGATCCATACATTAAGAAGATAGTACTCAATGGAAAACCATATGATCTCTATGTTCACAGTTACTTACACTTTGGTAGAGAAGCATCTCGAGCAGAGATTTTGAAGGTCACTCATGGTTCTGCCAGCCCTTGCATTTTAGCTGGATTTGATGGAATCTACACATATTCAGGTGAAGAGTTTAAGGCCAGTGCCCCTACTTCTGGAGCCAACTTTGATAAATGCAAAAAGATAATTCAAAAGGCTCTTAAATTGGATTATCCATGTCCTTATCAAAATTGCACTTTTGGTGGAATTTGGAATGGTGGAGGAGGAAGTGGACAGAAGAAACTTTTTGCTGCTTCATCTTTCTTTTACCTACCTCAAGATGTTGGTATGGTTGATCCAAATAAATCTAATTTAATACTACGTCCAGTGGATCTTGAGAATAAAGCTAAGATAGTTTGTACATTAAATGTTGAGGATGTAAAATCAGCTTATCCACTTCTTGAGAAGTTCAATATAGTTCCATATGCATGCATGGATCTTATATATCAGTATGAGTTGCTTGTCGATGGATTTGGCCTAGATCCATTGCAAGAAATTACAGCAGGGGAGAAAATTGAATATCAAGATGCTTTGGTGGATGCTGCATGGGCTCTAGGCAATGCCGTAGAAGCCATATCATTGTTACCTAAATTTGAACGATTGATGTATTTTGTTTAA 1368 0.3757 MEFLIKLITFLLFLIPTITSSQYLGNNLFTNRKIFLKQETITSYAVVFDAGSTGSRVHVYHFDQNLDLLHIGKDVEFYNKIQPGLSAYADNPEQAAKSLIPLLEQAENVVPEDFHSKTPIRLGATAGLRLLDGDASEKILQAVRDMLNNKSTFNIQPDAVSIIDGTQEGSYLWVTINYVLGNLGKRFTNTVGVIDLGGGSVQMAYAVSKKTARNAPKVTDGEDPYIKKIVLNGKPYDLYVHSYLHFGREASRAEILKVTHGSASPCILAGFDGIYTYSGEEFKASAPTSGANFDKCKKIIQKALKLDYPCPYQNCTFGGIWNGGGGSGQKKLFAASSFFYLPQDVGMVDPNKSNLILRPVDLENKAKIVCTLNVEDVKSAYPLLEKFNIVPYACMDLIYQYELLVDGFGLDPLQEITAGEKIEYQDALVDAAWALGNAVEAISLLPKFERLMYFV 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02686 455 Pfam GDA1/CD39 (nucleoside phosphatase) family 39 445 IPR000407 GO:0016787
Trre13g02686 455 FunFam Apyrase 1 164 423 - -
Trre13g02686 455 CDD NBD_sugar-kinase_HSP70_actin 46 232 - -
Trre13g02686 455 FunFam Ectonucleoside triphosphate diphosphohydrolase 5 44 173 - -
Trre13g02686 455 Gene3D Exopolyphosphatase. Domain 2 164 423 - -
Trre13g02686 455 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 11 443 IPR000407 GO:0016787
Trre13g02686 455 Gene3D - 44 438 - -
Trre13g02686 455 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 163 178 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02686 Trre-Chr13 25381749 25389905 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02686 43 443 Calmodulin-binding Proteins AT3G04080 54.478 2.25e-151 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02686 K14641 - ag:CAA83655 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02686 13 25381749 25389905 Trre13g02686 13 25381749 25389905 ECH