Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02675 ATGGAAACCCCACAAACCAATTTGCCCCCAGGTTTTAGGTTCCACCCTACTGATGCAGAACTCATTCTTCACTACCTTAGAAAAAAAATTGCCTCCATTCCCTTGCCTGTTTCCATCATTGCTGAAGTTGATATTTACAAGTTGGACCCTTGGGATTTACCAGCTAAGGCTTTGTTTGGTGAGAAAGAATGGTACTTCTTTAGTCCTAGAGATAGAAAGTATCCAAATGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGTTATTGGAAGGCAACTGGCACTGATAAAACTATAGTTGCATCATTGCCAATTGGAGGAGGAAGAGCACAAGAGAACATTATTGGTGTCAAAAAAGCTCTTGTATTTTACAAAGGGAAACCCCCAAAGGGTATTAAGACTAATTGGATCATGCATGAATATCGTCTTGTTGATAATAATAAACCTATTAAGCTCAAAGATTCTTCCATGAGGTTGGATGATTGGGTACTATGCCGAATTTACAAGAAATCAAAATGTGCACAAACTTCATCAGAATCATCGTCAGAAACAATGGTGAGCGAAGTAGAACACGCAGAAGAGGCGCAATTCAAGGAAACCCTTTTCCCAATCACAAAAAACAACACAACCTCTCCTTATCAAAACAACCTTATATCTCAAAAATCAGTGTCCTTTTCCAACCTATTAGATGCTATGGACTACTCCATGTTGAGTAGCTTCTTATCTGAAAACCATTCAAACCCATCAGGAATTGGATCAAGTTCAAGCTTCAACACTGAAAATTTTAATCAACAACAATCCTCTCAAATCAACACTAGCAACAATTACATGTCTCAAAATAAAAATCCTCAATTGAACACTTTAAAGCACCAACTTTCAAACATAGATGAGGACAACACTTCAGTATACCCATCAAAGAAATATTTGAGTTCATCTTGCAATTTCCCTAACATCAATTCACAATATGAAAACTATCTCATGAAGCAATCTTTGATGAATCAGCAATTAATTCTAGGTCCTCATCACCAATACCAAGGCTAA 1038 0.3776 METPQTNLPPGFRFHPTDAELILHYLRKKIASIPLPVSIIAEVDIYKLDPWDLPAKALFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVASLPIGGGRAQENIIGVKKALVFYKGKPPKGIKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKCAQTSSESSSETMVSEVEHAEEAQFKETLFPITKNNTTSPYQNNLISQKSVSFSNLLDAMDYSMLSSFLSENHSNPSGIGSSSSFNTENFNQQQSSQINTSNNYMSQNKNPQLNTLKHQLSNIDEDNTSVYPSKKYLSSSCNFPNINSQYENYLMKQSLMNQQLILGPHHQYQG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02675 345 MobiDBLite consensus disorder prediction 247 281 - -
Trre13g02675 345 Gene3D NAC domain 17 173 IPR036093 GO:0003677|GO:0006355
Trre13g02675 345 ProSiteProfiles NAC domain profile. 8 169 IPR003441 GO:0003677|GO:0006355
Trre13g02675 345 Pfam No apical meristem (NAM) protein 9 142 IPR003441 GO:0003677|GO:0006355
Trre13g02675 345 SUPERFAMILY NAC domain 4 169 IPR036093 GO:0003677|GO:0006355
Trre13g02675 345 PANTHER NAC TRANSCRIPTION FACTOR 56 8 244 - -
Trre13g02675 345 FunFam NAC transcription factor 56 17 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02675 Trre-Chr13 25232505 25233937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02675 4 345 NAC Transcription Factor Family AT3G04070 52.260 6.24e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre13g02675 NAM 5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02675 - - tpra:123890056 644.039