Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02673 ATGGAAGAACCAATTGTTGTTAACAAAGGTGAAGATCAAGTTCTTGATTTGCCACCAGGTTTCAGATTCCATCCAACAGATGCTGAGATAATTGTTTTTTATCTCACTGAAAAGGTTAAAAATAGCAAATTCAGTGCAACTGCTATTGGTGAAGCTGATTTGAACAAGTGTGAACCTTGGGATTTACCAAAGAAAGCAAAGATGGGAGAGAAGGAATGGTACTTTTTTTGTCAGAAAGATAGAAAATATCCAACAGGGATGAGAACTAATAGAGCAACAGTTTCTGGTTACTGGAAAGCTACAGGTAAAGACAAAGAGATTTATCACAAAGGAAAATCAAATCTTGTTGGTATGAAGAAGACTCTTGTGTTCTATAAAGGAAGAGCTCCGAAAGGTGAAAAAACTAATTGGGTTATGCATGAATTCAGATTGGAAGGCAAATTTGCTACTCACAATCTTCCTAAAGCTGAAAAGGATGAATGGGTTGTGTCAAGGGTTTTTCACAAGAACACAGATGTTAAGAAACCTCAAATTTCTGGTCTTTTAAGGATAAACTCAATTGGTCATGATGATCTTTTAGATTATTCTTCACTTCCACCTCTCATGGATCCTTCATACACAAATGATGATTTCAAAGGAATTACAAATCAACAAATTTCATCAACTAAATCACAATCAGATGGATATTATCTTCCAAGCTTCTCCATCAACAATCAACAAAACCAATTTGTCATGAAGCCAGAAGATAATTACCATAGAATAATTAACTATGATCATCATCTTAATCAAGAGATTAATCCAACCATGAACAACTATACTTCCAATTCCAACTCCAACCAAACAAATCTCAACAACCCAATTGGAAACACACTCTCACAACCTCAAATCCGAATCCAAAATCCAAACTTGAATTACTTTATGTATCAAAATAGGATGATGCAAAGTTCCATGCCAACAACATTTGGAAACAATAATAATGAGTGCAAAATGGAACAATTCTCTTCAAACCAATCACAAGATACAGGTCTTAGCAACGACACATCATCGGCCGTATCGAAGCAAGACATGGGAAGGAATAGGGCAATGTATGAAGATCTTGAAGGTCCTTCATCAGTTGCACCTCTCTCAGATATGGAAAGTTTTTGGGACTATTAA 1155 0.3558 MEEPIVVNKGEDQVLDLPPGFRFHPTDAEIIVFYLTEKVKNSKFSATAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATVSGYWKATGKDKEIYHKGKSNLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLEGKFATHNLPKAEKDEWVVSRVFHKNTDVKKPQISGLLRINSIGHDDLLDYSSLPPLMDPSYTNDDFKGITNQQISSTKSQSDGYYLPSFSINNQQNQFVMKPEDNYHRIINYDHHLNQEINPTMNNYTSNSNSNQTNLNNPIGNTLSQPQIRIQNPNLNYFMYQNRMMQSSMPTTFGNNNNECKMEQFSSNQSQDTGLSNDTSSAVSKQDMGRNRAMYEDLEGPSSVAPLSDMESFWDY 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02673 384 FunFam NAC domain-containing protein 100-like 26 173 - -
Trre13g02673 384 SUPERFAMILY NAC domain 14 170 IPR036093 GO:0003677|GO:0006355
Trre13g02673 384 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 309 - -
Trre13g02673 384 ProSiteProfiles NAC domain profile. 17 169 IPR003441 GO:0003677|GO:0006355
Trre13g02673 384 MobiDBLite consensus disorder prediction 321 354 - -
Trre13g02673 384 Gene3D NAC domain 26 174 IPR036093 GO:0003677|GO:0006355
Trre13g02673 384 Pfam No apical meristem (NAM) protein 18 144 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02673 Trre-Chr13 25144551 25146272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02673 1 206 NAC Transcription Factor Family AT5G18270 69.953 8.15e-108 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre13g02673 NAM 4.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02673 - - aprc:113861501 527.324