Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02664 ATGCATTTTTACCATCTTTTTAGGGTTTTTGAGTTTAGTGGTATTGTTAGAAAATTCTTACTTCAAAATTCACTCTCACTATCCTTTCTGAGTTCTTACACCAATTTCATAATCATCCTCCCACAATCAAGAGAAGATTTGTTTCTTGAGGAAACAAGAAGATTAAAAAACAGTAGGGACTTCATAGCTCCTTGTAAGTGCAAAGGTACTTCAAAATATGTTCATCGAGAGTGTTTGGACCATTGGCGATCTGTTAAGAAACATGATAAACCATAG 276 0.3406 MHFYHLFRVFEFSGIVRKFLLQNSLSLSFLSSYTNFIIILPQSREDLFLEETRRLKNSRDFIAPCKCKGTSKYVHRECLDHWRSVKKHDKP 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02664 91 SMART ringv_2 53 90 IPR011016 GO:0008270
Trre13g02664 91 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 90 IPR013083 -
Trre13g02664 91 ProSiteProfiles Zinc finger RING-CH-type profile. 48 91 IPR011016 GO:0008270
Trre13g02664 91 Pfam RING-variant domain 56 86 IPR011016 GO:0008270
Trre13g02664 91 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 58 87 - -
Trre13g02664 91 SUPERFAMILY RING/U-box 55 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02664 Trre-Chr13 24987667 24990569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02664 57 87 C3H Transcription Factor Family AT2G22120 80.645 1.34e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02664 - - egt:105972890 68.9366