Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02660 ATGGATGTTTTTTGCCAAAATGTATCAGTTTCTAGTGAGTCCAAACAAGAAAAGCTCCTTAACCCTTCTTGCTCAAACCTCTCAAGTAGCCTTGATGACCTCTTTTCTACTCAGAACATGGAAGTGAATGTTGAAATGGAATGGCTATCAGTGTTTGTTGAAGATTGTTTTTCAAGCCCACAAAGTTGTGTGTTGTTACCCTCAAATGTTGAAAACACAACAACAACAAACACAATCACATCTTCAAAACCTTCAAACACAACAAAGAAACAACAAAATGAGTCACCAACAATGCAAAATTTCACAGTTCCAGGCAAAGCAAGAAGCAAAAGGAAGAGACTTTCAGCACCAAGAAGACCAAAAAACCCTTTAAGCATTTTATCAAACACCTTAAACCCACAAAATGAATCACTTTGTTCTGACCCACCTCTTCTCAAACAAACCTATTGGTTAGCTGATAGTGAACTCATTGTACCTAAAGATGTAACAAAAGATGAAGATGATGATTGTGAAGTAATTGTGAAAAAAGAAAGGTTTGATTTTGAGGGTTTTGTTGAGAATGATGTTAATGTTAACAACAATGGTTCATCAAATTCAATTCCAACAAGGAGGTGTACACATTGTTTATCACAAAAGACACCACAATGGAGGGCAGGCCCATTAGGCCCAAAAACATTATGCAATGCTTGTGGTGTTAGGTACAAATCTGGAAGATTATTGCCTGAGTATAGGCCTGCTAAGAGTCCAACTTTTGTTAGTTATTTGCATTCAAATTCACATAAGAAAGTTATGGAAATGAGGATGAATGTTGTATCTTCTAATCCTAGTGAGTAG 834 0.3633 MDVFCQNVSVSSESKQEKLLNPSCSNLSSSLDDLFSTQNMEVNVEMEWLSVFVEDCFSSPQSCVLLPSNVENTTTTNTITSSKPSNTTKKQQNESPTMQNFTVPGKARSKRKRLSAPRRPKNPLSILSNTLNPQNESLCSDPPLLKQTYWLADSELIVPKDVTKDEDDDCEVIVKKERFDFEGFVENDVNVNNNGSSNSIPTRRCTHCLSQKTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMNVVSSNPSE 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02660 277 SMART GATA_3 199 253 IPR000679 GO:0006355|GO:0043565
Trre13g02660 277 CDD ZnF_GATA 204 251 IPR000679 GO:0006355|GO:0043565
Trre13g02660 277 Gene3D - 197 268 IPR013088 GO:0006355|GO:0008270
Trre13g02660 277 ProSiteProfiles GATA-type zinc finger domain profile. 199 235 IPR000679 GO:0006355|GO:0043565
Trre13g02660 277 MobiDBLite consensus disorder prediction 74 134 - -
Trre13g02660 277 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 263 - -
Trre13g02660 277 FunFam GATA transcription factor 195 276 - -
Trre13g02660 277 Pfam GATA zinc finger 205 239 IPR000679 GO:0006355|GO:0043565
Trre13g02660 277 PANTHER GATA TRANSCRIPTION FACTOR 25 274 - -
Trre13g02660 277 ProSitePatterns GATA-type zinc finger domain. 205 230 IPR000679 GO:0006355|GO:0043565
Trre13g02660 277 MobiDBLite consensus disorder prediction 74 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02660 Trre-Chr13 24942747 24943967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02660 44 267 C2C2-Gata Transcription Factor Family AT4G32890 42.478 5.62e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre13g02660 GATA 3.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02660 - - gmx:100812088 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02660 13 24942747 24943967 Trre13g02660 13 24942747 24943967 ECH
Trre13g02660 13 24942747 24943967 Trre3g03530 3 45633586 45635226 PCT