Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02654 ATGGCAATTGCACGCACTGGAGTCTACGTTGACGACTATTTGGAGTATGCAAACACATTACCCGCTGAACTGCAGAGACTTCTCAACACCGTTCGTGAACTCGATGAACGATCCCAATCTATGATAAACCAAACAAGGCAGCAGACAAAGTACTGTATGGGATTCTCATCTCATGGCTCAAAGAAGGGTAATCATAATCATAATCATAATCATAATTATAATAATAATTACATGAACGAAGATGATGATGCTTCCATCGAGAAAATGCGAAAAGAAATTGAAGCAAATCAGGATAGTGCATTGAGTTTATGTACTGAGAAGGTTTTGTTGGCACGGCAAGCATATGAACTGATAGATAGCCATGTAAAACGACTTGATGAGGATTTAAACAGCTTTGCTGAAGATTTAAAGCAAGAGGGGAAAATACCACAAGATGAACCAGCCATTCTTCCCCCGTTACCTATTGTCCCTAAACCTGAAAAGCGTAGATACGCATATGGTACACCTCAATCGAAGAGACTTGATTACAGGGAAAGAGACTGGGATAGAGACTTTGAGCTAATGCCTCCACCAGGAAGCCATAAGAAGGACTATGTGACCCCTATGGATATTGATCAACCCATTGATCCAAATGAACCTACATACTGTGTTTGTCATCAGGTATCTTTTGGAGACATGATTGCTTGTGACAACGAAAATTGCCGAGGAGGCGAATGGTTCCACTATTCATGTGTCGGCCTAACACAAGAGACAAGGTTCAAGGGAAAGTGGTATTGTCCAACTTGCAGATTACTACCACATTGTCAATGA 810 0.4111 MAIARTGVYVDDYLEYANTLPAELQRLLNTVRELDERSQSMINQTRQQTKYCMGFSSHGSKKGNHNHNHNHNYNNNYMNEDDDASIEKMRKEIEANQDSALSLCTEKVLLARQAYELIDSHVKRLDEDLNSFAEDLKQEGKIPQDEPAILPPLPIVPKPEKRRYAYGTPQSKRLDYRERDWDRDFELMPPPGSHKKDYVTPMDIDQPIDPNEPTYCVCHQVSFGDMIACDNENCRGGEWFHYSCVGLTQETRFKGKWYCPTCRLLPHCQ 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02654 269 CDD ING_plant 19 129 - -
Trre13g02654 269 ProSiteProfiles Zinc finger PHD-type profile. 213 265 IPR019787 -
Trre13g02654 269 Coils Coil 24 44 - -
Trre13g02654 269 CDD PHD_ING 215 262 - -
Trre13g02654 269 PANTHER INHIBITOR OF GROWTH PROTEIN 2 263 IPR028651 -
Trre13g02654 269 SMART ING_2 9 132 IPR024610 -
Trre13g02654 269 Pfam PHD-finger 215 263 IPR019787 -
Trre13g02654 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 264 IPR013083 -
Trre13g02654 269 FunFam PHD finger protein ING 207 265 - -
Trre13g02654 269 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 131 IPR024610 -
Trre13g02654 269 SUPERFAMILY FYVE/PHD zinc finger 191 264 IPR011011 -
Trre13g02654 269 Gene3D - 5 130 - -
Trre13g02654 269 SMART PHD_3 215 263 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02654 Trre-Chr13 24890984 24893173 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre13g02654 ING 3.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02654 - - lang:109339676 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02654 13 24890984 24893173 Trre13g02654 13 24890984 24893173 ECH