Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02649 ATGCCAGAGTTGAGAAGTGGAGCTAGAAGGTCAAAGCGGCTTGGAGATCTTCAGACTGGTCCACTACCTGTTGATCAAGGAGAGAATTGGGCAGAGCCTGCGCAGAACAGAACTAGGAGGAGAGTTGGAGGTGGAAGAGGAAGAGGTGGTAATGCCACAGGTTTAGGTAAAGGGTCTACACCAGCTGTACCCACAAGACGAACTGCAGCTGGTAGAGGCCGCGGAGCAAGATTGATTGATTTGGACCCTGAACCCTGTGAGGTACTTCCAGAACCTGTTGCATTAAGGGCTCAGGAACCTGTTTACAATCACGTAGAGGTAGTGGCCAATAATAACATTTTGATGGAGGGTGGAAGTGGTGATAAAGCGGCAGCAGCTGAAGAGGAAGCAACCACAACCCCTGTCCCTGATAGGGTACAAGTTGGTAACTCTCCTGTATATAAGACAGAAAGGAAGTTGGGTAAGGGTGGTTTTGGCCAAGTGTATGTTGGCAGAAGGGTTAGCGGTGGCTCTGATCGAGTAGGTCCTGATGCTATCGAGGTTGCACTCAAGTTTGAGCATAGAAACAGTAAAGGCTGTAATTATGGGCCTCCTTATGAGTGGCAAGTTTACAGTACTCTGAATGGCTGTTATGGCATTCCTGGGGTTCATTACAAGGGTCGACAAGGAGATTTCTACATTTTGGTGATGGACATACTTGGGCCCAGCCTTTGGGATGTGTGGAATTCTCTTGGTCAATCGATGTCGCCAAGTATGGCTGCTTGCATTGCAGTGGAGGCAATATCAATTCTTGAGAAGCTCCATTTGAAAGGGTTTGTGCACGGAGATGTAAAACCAGAAAACTTTTTGCTTGGTCAACCTGGAACGGCTGATGATAAGAAGTTATATCTTATTGATCTTGGTTTAGCTTCTAAATGGAAGGATGCATCATCTGGTCAACATGTTGAATATGATCAGAGACCTGATATATTCAGGGGAACAATAAGGTATGCTAGTGTACATGCACATTTAGGTAGGACTGGCAGTCGAAGGGATGATCTTGAGTCTCTGGCATACACATTGATATTTCTCATTAAAGGGAGATTGCCGTGGCAGGGTTATCAGGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAAAAAATGTCCACTTCTGCGGAGTTGATGTGCTGTTTTTGTCCTGCTCCATTTAAGCTGTTCCTAGAAGCAGTTACTAACATGAGATTTGACGAGGAGCCAAATTATTCCAAGCTTATATCACTCTTTGACAGCTTGATCGAACCATGCACTCCATTGAGACCTATTAGAATTGATGGAGCTTTGAAGGTCGGTCAAAAGCGAGGAAGGATGCTTATAAATTTGGAAGAAGATGAGCAGCCTAAGAAAAAAGTGCGATTGGGGAGTCCTGCTACTCAGTGGATATCTGTGTATAATGCACGCCGTCCCATGAAGCAAAGATATCACTATAACGTAGCGGACAATAGGCTCCGGCAGCATGTAGACAAGGGTATTGAGGATGGGCTGTATATAAGCTGTGTGGCCTCTTCAGCAAATTTGTGGGCCCTAATCATGGATGCAGGAACAGGTTTTTCTTCCCAGGTTTATGAGTTATCACCAGCCTTCCTGCACAAGGATTGGATTATGGAGCAATGGGAGAAAAATTACTATATCAGTTCAATAGCTGGTGCAGTTAATGGCAGTTCCTTGGTTGTCATGTCCAAAGGAACTCCTTATACACAACAGTCCTACAAAGTGAGCGAATCATTTCCTTTCAAATGGATAAACAAGAAATGGAAAGAAGGGTTCCATGTTACCTCCATGACTACTGCTGGCAGTCGTTGGGGTGTTGTTATGTCCAGAAATGCTGGCTATTCTGATCAGGTTGTGGAGCTTGACTTTTTGTATCCAAGTGAAGGAATCCATCGGCGATGGGAGAATAATTACCGAATTACTTCTATGGCTGCTACTAATGATCAGGCAGCCTTCATACTAAGCATACCGAAACGGAAATTAGTTGATGAAACTCAAGAGACTTTGCGGACATCTGCTTTCCCTAGCACCCATGTAAAGGAAAAATGGTCGAAGAATCTCTACATTGCCTCGATATGTTACGGACGAACTGTTTGCTAG 2127 0.4452 MPELRSGARRSKRLGDLQTGPLPVDQGENWAEPAQNRTRRRVGGGRGRGGNATGLGKGSTPAVPTRRTAAGRGRGARLIDLDPEPCEVLPEPVALRAQEPVYNHVEVVANNNILMEGGSGDKAAAAEEEATTTPVPDRVQVGNSPVYKTERKLGKGGFGQVYVGRRVSGGSDRVGPDAIEVALKFEHRNSKGCNYGPPYEWQVYSTLNGCYGIPGVHYKGRQGDFYILVMDILGPSLWDVWNSLGQSMSPSMAACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGTADDKKLYLIDLGLASKWKDASSGQHVEYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMSTSAELMCCFCPAPFKLFLEAVTNMRFDEEPNYSKLISLFDSLIEPCTPLRPIRIDGALKVGQKRGRMLINLEEDEQPKKKVRLGSPATQWISVYNARRPMKQRYHYNVADNRLRQHVDKGIEDGLYISCVASSANLWALIMDAGTGFSSQVYELSPAFLHKDWIMEQWEKNYYISSIAGAVNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWENNYRITSMAATNDQAAFILSIPKRKLVDETQETLRTSAFPSTHVKEKWSKNLYIASICYGRTVC 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02649 708 FunFam Casein kinase 1-like protein 119 467 - -
Trre13g02649 708 MobiDBLite consensus disorder prediction 1 74 - -
Trre13g02649 708 ProSitePatterns Protein kinases ATP-binding region signature. 153 184 IPR017441 GO:0005524
Trre13g02649 708 Pfam Protein kinase domain 147 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02649 708 SMART serkin_6 147 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02649 708 SUPERFAMILY Protein kinase-like (PK-like) 147 434 IPR011009 -
Trre13g02649 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Trre13g02649 708 Gene3D Transferase(Phosphotransferase) domain 1 113 464 - -
Trre13g02649 708 ProSiteProfiles Protein kinase domain profile. 147 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02649 708 PANTHER CASEIN KINASE-RELATED 147 673 - -
Trre13g02649 708 CDD STKc_CK1 147 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02649 Trre-Chr13 24816014 24821632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02649 252 421 MAP Kinase Kinase Kinase AT3G27560 22.674 6.45e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Trre13g02649 Pkinase 1.4e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02649 - - tpra:123890076 1349.34