Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02645 ATGACTACTACATATCATGCTGTCAAAGATGTTACAAATAAGAAGCAAACATGGAGACTTGCTGTCATGGTTGATGACCTGTGGAGTGTCTTTAAGGGAGAAGATGAAGATCATGTTGAAATGTTGCTTAGGGATGTTAACGGAGATACTATCCAAGCTTGGGTCAACCAACAGGATGTTCAAGTTTTCAAATCCATCATGAAAGAAGGCAAAACATATGCAGCACGTAACTTTCGAGTCGGTGAAAATGACTATCAGTACAAAATGTCTGAGCACAAATTCAAACTAACTTTTCTTGGAGCTACAAATGTGAGTGAACTTCAAATTCCTGATATGCCTGCTGCAACCTTCAACTTCAAAGATTATGCTGAAATCATCAAAGGAAGTTATCGTAAAGATCTGTTAGTTGATGCAATTGGAGTTGTTGTTGAGATTGGCAAGTGTGTCACTGGATCTGGTAGTAGGAAAGCTAATGCTGCATTTACACTGATGGATTTAAGTGAAAATACCCTTGATTGTACTTTGTGGGACGCATTGGCCGTCAAATTCATGGATGCATACAACAATCGCATTGAAACACAACCCTTTGTCATCATTCTGAAACATGCACACGTTAAGGAACCACAAGGGACCTACCCATTACAATTCACAAATGTTTGGAATGGAACTAAGGTGCTTTTTGATGATAACATAAGTGAGATTGCTGCTTTTAAAAAAAGTTTGCCAAAGAATCTGCAATATGAATCCCAGCATAGTAGCATTTCCGCTTCTACTCAATTCTATGGACACAGTAGCCAAGGATCACAGTACAACAATGATGATCTTTTTATGAAAAATGCTCGTGTTATTCGTTTGGGAGATATGAAACAACTTAAGACAGACACCTTCTGTGTTACCGTTGTCAAAATTGGACAAGTACTGGTCAACTCTGGAGGTTGGTTTTTCCGATCGTGCCGAATATGTAACAAAAAAGCTGAAGGTCGTGAACCTCCTTTTGTATGTAGAGAAGGACACAGTGGTGATGATCCAATTGTCAAGTATGGATACTTTACCAACCTCCACTCTATTTTATAA 1074 0.3864 MTTTYHAVKDVTNKKQTWRLAVMVDDLWSVFKGEDEDHVEMLLRDVNGDTIQAWVNQQDVQVFKSIMKEGKTYAARNFRVGENDYQYKMSEHKFKLTFLGATNVSELQIPDMPAATFNFKDYAEIIKGSYRKDLLVDAIGVVVEIGKCVTGSGSRKANAAFTLMDLSENTLDCTLWDALAVKFMDAYNNRIETQPFVIILKHAHVKEPQGTYPLQFTNVWNGTKVLFDDNISEIAAFKKSLPKNLQYESQHSSISASTQFYGHSSQGSQYNNDDLFMKNARVIRLGDMKQLKTDTFCVTVVKIGQVLVNSGGWFFRSCRICNKKAEGREPPFVCREGHSGDDPIVKYGYFTNLHSIL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02645 357 Gene3D - 110 252 IPR012340 -
Trre13g02645 357 Pfam Domain of unknown function DUF223 40 135 IPR003871 -
Trre13g02645 357 SUPERFAMILY Nucleic acid-binding proteins 117 247 IPR012340 -
Trre13g02645 357 CDD RPA1_DBD_B_like 137 242 - -
Trre13g02645 357 SUPERFAMILY Nucleic acid-binding proteins 5 106 IPR012340 -
Trre13g02645 357 Gene3D - 3 106 IPR012340 -
Trre13g02645 357 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02645 Trre-Chr13 24763464 24765163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02645 43 341 Core DNA Replication Machinery Family AT5G08020 25.078 6.59e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02645 - - tpra:123884216 395.201