Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02625 ATGGAAATTCAATTTCAGCAACCAAACATGCAGAATCAGAAAGCAGGAATTTCTGTAACAAAGAAAGGAGGAAAGTTCAAAGGTAGAAACAGAAACAGTAATAACACAAACAAATTTGTTGGTGTTAGACAAAGGCCATCAGGTAGATGGGTTGCTGAGATCAAAGACACAACTCAGAAGATAAGAATGTGGCTTGGAACATTTGAGACAGCTGAGGAAGCTGCTAGAGCTTACGATGAAGCCGCGTGTCTTCTTCGAGGTTCCAACACTCGAACCAACTTCATTACTCATGTCTCATTGGATTCTCCTCTTGCTTCTAGGATAAGAAATCTTCTTAACAACAGAAAAGGCGACAAAAAAAAGGAAGATGGTGTTGCTTCTTCTACAAGTAACAGCAATATTAGTAATGCTAGCACTATTAGTAATACTAATGCAATTACAAGCAATGATGATAACAAGGAAAATGCTCTTTCAAGTGAAGATACTCAAAAAACAGAACTTTTTGAGGATGTTTATAAACCCGATTTGAGCAATTTCAAGGAAGATTTTGAATCAGGTTCGAAATCCAACATTTCGTGGGGTTTCGGACCTGTCTTTGATCATTTTCCTTTTGCTCAATTATTAGATATATCTAAGACTAATGGCATGAATGATGAATCTAACTTGGAACTTTCAGAATTCGAAAGAATGAAAGTTGAAAGACAGATATCAGCTTCACTTTATGCTATTAATGGAGTGCATGAATACATGGAAACTGTTCATGAATCCAATGAAGCTTTATGGGATCTTCCACCTTTGTGCTCATTGTTCTGTTAA 816 0.3652 MEIQFQQPNMQNQKAGISVTKKGGKFKGRNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGDKKKEDGVASSTSNSNISNASTISNTNAITSNDDNKENALSSEDTQKTELFEDVYKPDLSNFKEDFESGSKSNISWGFGPVFDHFPFAQLLDISKTNGMNDESNLELSEFERMKVERQISASLYAINGVHEYMETVHESNEALWDLPPLCSLFC 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02625 271 MobiDBLite consensus disorder prediction 113 162 - -
Trre13g02625 271 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Trre13g02625 271 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Trre13g02625 271 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Trre13g02625 271 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Trre13g02625 271 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Trre13g02625 271 MobiDBLite consensus disorder prediction 126 153 - -
Trre13g02625 271 SUPERFAMILY DNA-binding domain 38 95 IPR016177 GO:0003677
Trre13g02625 271 FunFam ethylene-responsive transcription factor RAP2-11 37 96 - -
Trre13g02625 271 Pfam AP2 domain 38 87 IPR001471 GO:0003700|GO:0006355
Trre13g02625 271 CDD AP2 38 94 IPR001471 GO:0003700|GO:0006355
Trre13g02625 271 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02625 Trre-Chr13 24513715 24514530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02625 25 271 AP2-EREBP Transcription Factor Family AT5G19790 44.402 2.64e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre13g02625 AP2 5.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02625 K09286 - gmx:100796898 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02625 13 24513715 24514530 Trre13g02625 13 24513715 24514530 ECH
Trre13g02625 13 24513715 24514530 Trre3g03564 3 46026265 46027260 PCT