Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02618 ATGAATTCCTCAAACGTTACATATTCCATTATCACAAACCATGACAAAACAACAACGAATGTGTGTTTCTATAAGACAACAAGCCACAGTGCGTGTCTTTGGATGCAAAATTCTTTAGAAGAAACACTACCTGGATTTGTTCTTCAATTAGCTCTTATCTTATTATTCAATCGTATTTTGCTATTTCTCTCTGAATTTTGCAAAGTACCTCGTATTGTTCCCAACATTTTTGCTGGTTTTTTATTAGGTCCATCTGGTTTGGGAAAATGGAAATATTTCTTCAAAAGTGTATTCCCATACAACAGTTTGATGACATTAGAGACAGTGGGAGCATTGACACTTGTTTACTATGTGTTTTTGATTGGTTTAGAAATGGATTTAAAAGCAATTAGAAGATGTTACTTCAATAAGAAGGCAATGATTCTTGCATCTACTTGTATAGTCTTCACATTACCAATTGGTATGTGTTTATACTACCTTTTTGTAACAGACATGGGTCACAAAAGATTGTCATCTATAGAAACTGATAAACACATGAGAGGTGCATTATTTTGGGGATTGACACTTTCATGTAGTAGTGATTTTCCTGAAATTGTTAAAATTCTTTCAGATTTGAAGCTTTTGTTAACAGATAATGGACAATTGGCGATAACTTCTATTTTGATTAATGACTTGTTGTGTTGGACATTATTTATGATGGCTCTAACACAACTCATTTATGTTTCTTTCGAGTCACTACTCATCGTCGTGTTACTTTTGTTGGTATGTTTCTATGCGGTTTATCCTTTTATTAAGTGGGTTGTTAAGAAAATTTCAAAAGGTGATCGCGAGTTTAGGGAGTCGCAAGTGCTAATTCTTCTTAACGTGGTTTTGGTCATTGGATTAATCGCTGATGGGTTAGGTTCACATTCAATAACCGGTGCTTTCTTTTTAGGAGTTTTTATCCCAAAGGGTATGCTTAACAATGCGGTTCAAGATAAGGTTTATGATTTTATGGCCGCATTCATGATGCCTCTATTTTTTCTCATGATTGGGGCGAGAACTAATATTCGAGATTTGGCTTTGAACACACATTGGATAACGGTTGTCACTGTTATTGTGTTAGCTTTATTGGTAAAAATGGTGTTCGTTTTTGTGGTTTCTAAGATATATCGGATGCCACTCATGGATAGATTATCCCTTGCACTTCTCATGAATACTAAAGGGATAACGCCGCTAATCATTTTGTACTCCGCCATGGATAGAATAGACCTAGTGAGCCAAACCTATGTGGTGATGTTGTTGGCATGTTGGTTAATGACAGCTATTGCTGGTCCTGTCTTATATTTCATCACACAATCCGCCACAAGCAAAGGTATTGGAAGTAAAAGGAGGAATCTGCAAGACACACGACCAGACTCGCCACTTAGAGTGCTGGCTTGTGTCCACTCAAAACACGACGCCAATGCCATCATCAGCCTTCTCAAAGCATCCAGTCCATCAGTTAGGTCTCCAATTCAGGTGTTGGCCGTGGAGTTGATCGAGATGTCAGATAGACCAACTTCATCACTGGTCATAAGAGACGCTCGGAAGCCTTCATTTAAAGCCCATCCAGTCCGGGTAGAAAGCTTTCGGAAAAACAACGGAGACAAACTTGGAAGCTTCGACAACCTAAGCCAAGCTATATTTGCTGACAAACTCAGAATTATCTCCGACTACAACACCATGCACAAAGACATCATAAACCTCTGCCTACGTAGAAACGTAAACCTCATTGTAACCACTCTCCACAGACAACCTACCTATGACGGATTAGGCGCAGGCACCGCGACTGCTAGAGCCATCAACATAATCAACAGAGACCATGATAGCAAGGATGAGAAGAGACTAGTATTGGAAAATCTAGAAAAAGGAACACCGTGCAGTTTAGCAATTTTCGTTGACCGTGATTTCGGTGGTGAGAAGAATTCTAAAGAGATGAGAATAGCTATGTTATACATTGGCGGTGTTGATGACCGTGAAGCACTTTCTTATGCTTGGAGAATGAGTAGGAACACGGAGATTCATTTAACGGTGGTGAGGCTTGTTTGGGACAGTCCTGATGATGAGTTCAATGAATTGGACAGAGAGTATTTAAGAGTATTTGTGTATCAAACAAATGATACACCGTCGATAAGGTATTTGGAAAAAGTGGTGAAAGATGAGAAGGAAACCGTAAGGCTTTTAAATAGGATCGGGAGTAAAGGATTCGATTTGTATATCATCGGGAGAGGACATGGGAGAAAGATGCCATTGGCGCAAACGTTGAATCCTGTTTTGGATGAGCCTGTTTTTGGTCCTCTTGGTGATACTTTGACAGATTTGAATTCTGCTGCTAACACATCTATTTTGATATTTCAAAAAGAAGCTGAAAGTGATAATTCCGCGAAACATGAGTGCGATACTTCTACGATATCTTCGCAGTTTTATGATGGTGTTATGGATCAACAAGAGCAACAGGTGTATACTCCAGCAGTGTCATTTGGTCCCAATTTACGGTGA 2520 0.3905 MNSSNVTYSIITNHDKTTTNVCFYKTTSHSACLWMQNSLEETLPGFVLQLALILLFNRILLFLSEFCKVPRIVPNIFAGFLLGPSGLGKWKYFFKSVFPYNSLMTLETVGALTLVYYVFLIGLEMDLKAIRRCYFNKKAMILASTCIVFTLPIGMCLYYLFVTDMGHKRLSSIETDKHMRGALFWGLTLSCSSDFPEIVKILSDLKLLLTDNGQLAITSILINDLLCWTLFMMALTQLIYVSFESLLIVVLLLLVCFYAVYPFIKWVVKKISKGDREFRESQVLILLNVVLVIGLIADGLGSHSITGAFFLGVFIPKGMLNNAVQDKVYDFMAAFMMPLFFLMIGARTNIRDLALNTHWITVVTVIVLALLVKMVFVFVVSKIYRMPLMDRLSLALLMNTKGITPLIILYSAMDRIDLVSQTYVVMLLACWLMTAIAGPVLYFITQSATSKGIGSKRRNLQDTRPDSPLRVLACVHSKHDANAIISLLKASSPSVRSPIQVLAVELIEMSDRPTSSLVIRDARKPSFKAHPVRVESFRKNNGDKLGSFDNLSQAIFADKLRIISDYNTMHKDIINLCLRRNVNLIVTTLHRQPTYDGLGAGTATARAINIINRDHDSKDEKRLVLENLEKGTPCSLAIFVDRDFGGEKNSKEMRIAMLYIGGVDDREALSYAWRMSRNTEIHLTVVRLVWDSPDDEFNELDREYLRVFVYQTNDTPSIRYLEKVVKDEKETVRLLNRIGSKGFDLYIIGRGHGRKMPLAQTLNPVLDEPVFGPLGDTLTDLNSAANTSILIFQKEAESDNSAKHECDTSTISSQFYDGVMDQQEQQVYTPAVSFGPNLR 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02618 839 Pfam Sodium/hydrogen exchanger family 52 441 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre13g02618 839 Gene3D - 45 451 IPR038770 -
Trre13g02618 839 PANTHER CATION/H + ANTIPORTER 23 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02618 Trre-Chr13 24464354 24468327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02618 21 794 Antiporter Super Family AT2G13620 32.346 6.56e-135 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02618 K26731 - psat:127126630 1159.82