Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02580 ATGAATATGGATTTAGGTTGTAGTTTGCCACAGTCAAGAATTTTAAACGGAGCCGTCGGGACTAGTTATAGACAAAAATATGTAGGTCAAGTAGGTTTTCTTGACTCTAGGAGAGGTTTTGGTTGTGGATTTTTAGGCAAAAGTGTTTTGAGATCACGTTTTAGTGTGGAGAACGAAGTTACTTGTGTTTCTTCTTGGAATAATTCGAAAGTGGTTTCTGGTGGTGAGTTTAAAGTTTTGAACACAAAGAGAAGTATGTCATGTAAGAATGAGAAACTTCTTATGGGATCCAGAGTCATTTGGTTGAAATGCCAGGGTAATGATTCTTTAGCTTATGTTAATGGCAATGGCCGCAATGTTGATCATGTGGAAGGTTCGGGTGAGGATGCAGTGGTGGTACCTATATCTAGTGTTGAATTGGATGTTCCAGTGGAAGAAGAAGGAGGGAGGGCTGAGAAGGAAATAGGAGTAGAGGAACAAAGTGTGGATGAATTGAAAGAACTATTGCAAAAAGCCTTGAAAGAGCTAGAAGTTGCACAAATAAATAGTACTATGTTTGAGGAAAAGGTTAAAAAAATATCAGAGACTGCCATCTTTTTGCATGATGAAGCAGCCCAATCTTTAAATGATGTTAATTCTACCCTTGACACCATTCAAAAAGTTGCACATGAAGAACATCAGGCCAAAGAGGCTGTCCAAAATGCTACAATGGCTCTTTCATTAGCCGAGGCAAGACTGCAGGTAGCCATAGAGTCTTTAGAAGCAGCAAAAGAAGTGCATGAAGGTTCTAATGAGAGTGATGGCGATAAGGACTTAACAGAAAAGCAGAGCACACTTTTTGTTGCACAAGAAGATATAAAGGAATGCCAGGAAACTTTGGCAAATTGTGAGGTAGAATTGAAGCGCTTGCAAAATAAAAAGGAGGAGTTGCAAAACGAAGCTAACAAATTGCAAGAAATTGCTGAAAAGGCACAGTTGGATGCAGTGAAAGCTGAGGAGGATGTTACAAACATAATGCTTTTAGCAGAGCAAGCTGTTGCATTTGAACTCGAGGCTACACAACGTGTGAATGATGCTGAGATTGCTTTACAGAGAGCTAATAAGTCTTTTACAAATTTGAATGCTGAGACTGCAGAAACTATACAAGTACAAGATGTCGTGCTTGTTTCTGAGGAGGAGAACAATGTAGAAAATTTTTCTGATGATGTCACAGTTGGTAGAGACAAAGATTTGGCCACAATTGATGATGCATCTTTGCTTGCCAAGTTATCATCTGAAACAGAATCTGAAAAAACCATCCAAATATCAGAAGACACAGCACAGTCTGATTATATAAGTGATAGTGAGAATACCGTCCAAACAAAAAAGCAGGAAACACAGAAAGATTTGACTAAAGATAGTTCACCATTTGCTCCCAAAGCATTATCGAAAAAGTCATCTCGATTCTTTTCTGCATCGTTCTTTTCTTTTACTGAAGAGGAGGCTGAGTCCACACCAGCATCAGTTTTCCAAGGCCTCATATTATCCGCAAAGAAGCAGTTGCCCAAGCTAGTTCTAGGGTTATTGTTAATGGGAGCAGGAGCTGCTGTCTATGCCAATAGGGCAGAGAAAAATGCTCAGTTCCTTCAACAGCCAGATGTTATTGTGACCAGTGCTGAAGAATTTTCTTCTAATGCAAAGCCTCTATTTAGAAAACTCCAGAAAATCCCCAAGAAAATTAAGAAAATCATTGCGTCATTACCTCATCAAGAGGTGAATGAGGAAGAAGCCTCCCTCTTTGACATGCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCAATATTTCAAAAAATCCCTGGAGGTAGTCCTGTTCTTGGCTACTTGGCTGCTGGTATCTTGATTGGGCCTTACGGTCTCTCTATCATTCGTCATGTTCATGCGACAAAAGCGATAGCTGAGTTTGGAGTTGTTTTCCTTTTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGGCTCAGTTCTATGAAGAAATATGTTTTTGGATTAGGTTCTGCACAGGTTTTGGCAACTGCTGCAGTTGTTGGCTTGGTGGCTCATTATGTCTGTGGCCTTCCTGGCCCTGCTGCTATAGTCATCGGGAATGGCCTGGCTTTATCATCCACTGCCGTTGTTCTGCAGGTGTTGCAGGAAAGAGGCGAGAGCACATCACGGCATGGGCGAGCTACATTTTCTGTTTTACTTTTTCAGGATTTGGCTGTTGTAGTCTTGCTAATACTCATACCTCTTATTTCACCAAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCCATTGCTGAAGCTCTTGGACTGGCAGCTGTTAAGGCAGCAGTTGCCATTACTGCCATAATTGCAGGTGGACGATTGCTCCTTCGGCCAATATACAAGCAAGTTGCAGAAAATCAAAATGCTGAAATCTTCTCAGCCAATACACTTCTTGTTATTCTTGGGACCAGTCTTCTTACCGCCAGGGCAGGACTTTCAATGGCACTGGGAGCATTTTTGGCTGGCTTACTACTGGCAGAAACTGAATTTTCCTTGCAGGTTGAATCTGATATTGCACCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTTTTGTTTCAAACTTCCCAGTCGTCACGGGGACACTGGCACTCTTAATATGTGGAAAGACTATCTTAGTTTCTTTGATGGGTAGAATCTTTGGGATTTCCCTCATTTCTGCTTTAAGAGCCGGTCTTCTTCTCGCTCCTGGTGGAGAATTTGCCTTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCCCAGCTATCTTCTTTGCTGTTTCTTGTTGTGGGCATTTCAATGGCCATCACTCCATGGCTAGCTGCAGGAGGCCAGCTGATTGCTTCCCGTTTTGAGCAGCATGATGTTAGAAGTTTATTACCTGTAGAAAGTGAGACAGATGATCTGCAAGATCATATTATTATTTGTGGATTTGGACGAGTTGGCCAGATCATTGCGCAACTTCTTTCTGAGCGACTTATTCCATTTGTTGCACTAGATGTGAGAAGTGAAAGAGTGGCAGTTGGGCGAGCGCTGGATCTCCCTGTGTACTTTGGAGATGCTGGCAGTCGAGAGGTCCTACATAAGGTCGGGGCTGAAAGGGCATGTGCTGCAGCTATAACTCTAGATACGCCTGGAGCAAATTATAGAACAGTTTGGGCTCTGAGCAAGTACTTCCCAAATGTGAAGACTTTTGTTCGTGCCCATGACGTTGATCATGGATTGAATTTAGAAAAGGCCGGAGCTACTGCGGTGGTCCCAGAGACCTTGGAACCAAGTCTTCAACTAGCAGCTGCTGTACTTGCTCAGGCTAAACTCCCCGCATCAGAGATTTCAGCGACTATAAATGAATTCAGATGCCGACATCTAGCTGAGCTTACAGAGCTGTGTGAAGCAAGTGGAAGTTCACTTGGTTATGGATATACAAGAATTATGAGCAAATCCAAATCTCAATCCCCAGATACATTAGATTTAGATGAGACCCAAGTCTCTGAAGGGACACTGGCAGTATGA 3597 0.422 MNMDLGCSLPQSRILNGAVGTSYRQKYVGQVGFLDSRRGFGCGFLGKSVLRSRFSVENEVTCVSSWNNSKVVSGGEFKVLNTKRSMSCKNEKLLMGSRVIWLKCQGNDSLAYVNGNGRNVDHVEGSGEDAVVVPISSVELDVPVEEEGGRAEKEIGVEEQSVDELKELLQKALKELEVAQINSTMFEEKVKKISETAIFLHDEAAQSLNDVNSTLDTIQKVAHEEHQAKEAVQNATMALSLAEARLQVAIESLEAAKEVHEGSNESDGDKDLTEKQSTLFVAQEDIKECQETLANCEVELKRLQNKKEELQNEANKLQEIAEKAQLDAVKAEEDVTNIMLLAEQAVAFELEATQRVNDAEIALQRANKSFTNLNAETAETIQVQDVVLVSEEENNVENFSDDVTVGRDKDLATIDDASLLAKLSSETESEKTIQISEDTAQSDYISDSENTVQTKKQETQKDLTKDSSPFAPKALSKKSSRFFSASFFSFTEEEAESTPASVFQGLILSAKKQLPKLVLGLLLMGAGAAVYANRAEKNAQFLQQPDVIVTSAEEFSSNAKPLFRKLQKIPKKIKKIIASLPHQEVNEEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHATKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLATAAVVGLVAHYVCGLPGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLFVSNFPVVTGTLALLICGKTILVSLMGRIFGISLISALRAGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMAITPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSERVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPASEISATINEFRCRHLAELTELCEASGSSLGYGYTRIMSKSKSQSPDTLDLDETQVSEGTLAV 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02580 1198 MobiDBLite consensus disorder prediction 430 453 - -
Trre13g02580 1198 MobiDBLite consensus disorder prediction 430 473 - -
Trre13g02580 1198 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 997 1136 IPR036291 -
Trre13g02580 1198 FunFam K(+) efflux antiporter 2 chloroplastic 588 974 - -
Trre13g02580 1198 Pfam TrkA-N domain 1001 1114 IPR003148 GO:0006813
Trre13g02580 1198 FunFam K(+) efflux antiporter 2 chloroplastic 996 1160 - -
Trre13g02580 1198 MobiDBLite consensus disorder prediction 1175 1198 - -
Trre13g02580 1198 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 197 1180 - -
Trre13g02580 1198 ProSiteProfiles RCK N-terminal domain profile. 1000 1122 IPR003148 GO:0006813
Trre13g02580 1198 Coils Coil 155 182 - -
Trre13g02580 1198 Coils Coil 239 259 - -
Trre13g02580 1198 Pfam Sodium/hydrogen exchanger family 598 968 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre13g02580 1198 Gene3D - 588 976 IPR038770 -
Trre13g02580 1198 Coils Coil 356 376 - -
Trre13g02580 1198 Coils Coil 286 334 - -
Trre13g02580 1198 Gene3D - 996 1160 - -
Trre13g02580 1198 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 599 879 IPR004771 GO:0006812|GO:0008324|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02580 Trre-Chr13 23723433 23748203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02580 86 1198 Inorganic Solute Cotransporters AT4G00630 69.558 0.0 1404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02580 K03455 - gmx:100798822 1732.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02580 13 23723433 23748203 Trre13g02580 13 23723433 23748203 ECH
Trre13g02580 13 23723433 23748203 Trre15g01210 15 9427684 9437439 PCT