Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02579 ATGTCATTCACAGGAACTCTTGATAAATGCAAAGCTTGTGATAAGACTGTTTATGTTGTTGACTTGTTAACTCTTGAAGGTATACCTTATCATAAAAATTGCTTCAAATGTAGTCACTGCAAGGGATATCTTACGATGAGCACCTACTCCTCAATGGATGGTGTCCTCTATTGTAAGCCACATTTTGAGCAGCTTTTCAAAGAATCAGGCAATTTCAGCAAGAACTTTCAAACAGCAAAGTCTTCTGAGAAACAAAATGAGTCAGTGAACAGGGCCCCCAACAGACTATCCTCTATGTTCAGTGGAACTCTAGACAAATGTTCAGTCTGCACAAAAACTGTCTATCCTTTGGAAAAGATGACATTGGAAGGGGAATGTTACCACAAGAATTGCTTTAGGTGTGCTCATGCAGGTTGCCACCTTACACATTCTTCATATGCTGCCCTGGATGGTGTCCTCTATTGCAGGCACCATTTTCAACAGCTTTTCATGGAGAAAGGAAACTACAATCATGTACTTCAAGCTGCTGCTGCAAATAAAAAGAATGTAACTCCACCTCCTGAACCAGCTGAATCAGTTGAACCTGCGGAATCAACTGAACCAGCTGAATCAGCTGATGCTGACGATGAACCATCAAAGCCAGAAGGAGAAACTGAGGAACAGACAGAAGAAAAGTCTGAGACACAGGATGATTGA 696 0.4138 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSEKQNESVNRAPNRLSSMFSGTLDKCSVCTKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYNHVLQAAAANKKNVTPPPEPAESVEPAESTEPAESADADDEPSKPEGETEEQTEEKSETQDD 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02579 231 PANTHER OS06G0237300 PROTEIN 6 88 - -
Trre13g02579 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 99 132 - -
Trre13g02579 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Trre13g02579 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 172 - -
Trre13g02579 231 FunFam LIM domain and actin-binding 1 4 74 - -
Trre13g02579 231 FunFam LIM domain and actin-binding 1 101 171 - -
Trre13g02579 231 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Trre13g02579 231 SMART lim_4 9 61 IPR001781 -
Trre13g02579 231 SMART lim_4 106 158 IPR001781 -
Trre13g02579 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Trre13g02579 231 Gene3D Cysteine Rich Protein 5 103 - -
Trre13g02579 231 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Trre13g02579 231 ProSiteProfiles LIM domain profile. 105 165 IPR001781 -
Trre13g02579 231 Pfam LIM domain 107 162 IPR001781 -
Trre13g02579 231 Pfam LIM domain 10 65 IPR001781 -
Trre13g02579 231 MobiDBLite consensus disorder prediction 180 231 - -
Trre13g02579 231 MobiDBLite consensus disorder prediction 212 231 - -
Trre13g02579 231 CDD LIM1_SF3 6 68 - -
Trre13g02579 231 Gene3D Cysteine Rich Protein 104 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02579 Trre-Chr13 23714225 23716489 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Trre13g02579 LIM 1.8e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02579 - K09377 gmx:100779513 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02579 13 23714225 23716489 Trre13g02579 13 23714225 23716489 ECH
Trre13g02579 13 23714225 23716489 Trre15g01208 15 9418133 9419953 PCT