Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02577 ATGGTTAGGCATGGCATCACCACCAAGGGGCCATTGCACATGGTGTACTCTCTCAGAGAGAAATTAAGAATGGGAAGGACACCATGTTGTGATAAGAAGGGTTTGAAGAAAGGACCTTGGACTGCTGAAGAAGATGAAATTCTTGCTAACTATATCAAGAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCCAAGATCACAGGTCTTCTTCGTTGTGGTAAGAGTTGCAGGCTTAGGTGGACCAACTATCTCAGACCTGACATTAAACGTGGTCCCTTTACTCCTGAGGAAGAAAAACTAGTCATACAACTTCATGCCATCCTTGGAAATAGGTGGGCTGCAATTGCGTCTCAGTTACCAGGAAGAACAGACAATGAGATAAAGAATTTTTGGAACACGCATTTGAAGAAACGTCTGAAAAGCATGGGGATTGATCCAAAAACACATGAGCCAGTAGCTTCATCAACAAGTTACCCTAATCGCAAGTCACATGCTTCGATTTCGACACGCCACATGGCTCAATGGGAGAGTGCGAGGCTTGAAGCAGAAGCAAGACTCTCAATTGAGTCATCACATTTCAACAACAACAATCCTAATTCCATTGCAAAAATTGATTCTTCTTCCGATTACTTTCTTCGTATATGGAATTCTGAAGTTGGAGATGCATTTCGCAATGTTAACAAAATTACTAGTTGTTGTGAGAGTCCTATTTCTGCAGGATCATTATCTACCAACAAATGTGACTATGTTACAGCAGAGTTAGCTTCTAATAATCCAATAAGCAATAGTGTGAAAGAAGAGTTTGAGTGGAAAAACTATAAGTTTTGTGCTGAAGATGTGATTCTTGGATCTGATTCATCAAGCTCTAATGATATGGATGATTCATCAGACACTGCTTTCCAGCTCTTGTTGGATTTTCCTATGAACACTGACATGAGCTTCTTGGAAAATTCTTTTGCTTTTTCCCTTTAA 975 0.4051 MVRHGITTKGPLHMVYSLREKLRMGRTPCCDKKGLKKGPWTAEEDEILANYIKKNGGHGSWRSLPKITGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNFWNTHLKKRLKSMGIDPKTHEPVASSTSYPNRKSHASISTRHMAQWESARLEAEARLSIESSHFNNNNPNSIAKIDSSSDYFLRIWNSEVGDAFRNVNKITSCCESPISAGSLSTNKCDYVTAELASNNPISNSVKEEFEWKNYKFCAEDVILGSDSSSSNDMDDSSDTAFQLLLDFPMNTDMSFLENSFAFSL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02577 324 Pfam Myb-like DNA-binding domain 37 85 IPR001005 -
Trre13g02577 324 Pfam Myb-like DNA-binding domain 91 136 IPR001005 -
Trre13g02577 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 85 IPR017930 -
Trre13g02577 324 ProSiteProfiles Myb-like domain profile. 32 85 IPR001005 -
Trre13g02577 324 SMART sant 36 87 IPR001005 -
Trre13g02577 324 SMART sant 90 138 IPR001005 -
Trre13g02577 324 FunFam Myb transcription factor 34 91 - -
Trre13g02577 324 SUPERFAMILY Homeodomain-like 34 132 IPR009057 -
Trre13g02577 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Trre13g02577 324 Gene3D - 93 167 - -
Trre13g02577 324 Gene3D - 34 91 - -
Trre13g02577 324 FunFam MYB transcription factor 93 140 - -
Trre13g02577 324 CDD SANT 39 85 IPR001005 -
Trre13g02577 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 24 262 - -
Trre13g02577 324 CDD SANT 93 136 IPR001005 -
Trre13g02577 324 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02577 Trre-Chr13 23644473 23652294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02577 24 320 MYB Transcription Factor Family AT3G61250 62.000 7.14e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre13g02577 Myb_DNA-binding 9.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02577 K09422 - gmx:100816569 434.876