Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02576 ATGAACAACAGAGGTAGATATCCACCTGGGATCGGGTTAGGGCGAGGTGGTGGTGGTGGTGGTGGTTTGAACTCGAACACTGGGTATCAACAGAGGCCACATCAACAACAACAACAGTATGTGCAGAGGCACATGGTGCAAAATCAGCATCCACAACAATACCAGCAGCAGAATCAACAGAATCATCACTATCAGCAACAACAGCAGCAGCAGCAGCAGCAACAGTGGCTGAGAAGAAACCAGTTGGGTGGCACTGACACCAACAATGTTGAGGAGGTTGAGAAGACTGTACAGTCTGAAGAAAATGACACTAGTTCACAAGATTGGAAGGCAAGACTAAAGCTTCCACCAGCTGATACACGCTATAGGACAGAGGACGTGACAGCAACTAAAGGAAATGAGTTTGAGGATTACTTTTTGAAGCGTGAGCTGCTAATGGGAATATATGAGAAGGGGTTTGAAAGGCCATCCCCAATCCAAGAAGAAAGCATTCCAATTGCCCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACAGCTGCGTTTTGCATTCCTGCATTGGAAAAAATTGATCAAGATAATAATATTATTCAAGTTGTTATACTGGTTCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTGTGCAAAGAGCTTGGAAAGCATTTGCAAATTCAAGTTATGGTCACAACAGGTGGTACCAGCCTGAAAGATGACATTATGCGTTTACATCAACCTGTTCATCTGCTAGTTGGTACTCCAGGAAGAATATTGGATCTTGCAAAGAAGGGTGTTTGCGTTCTAAAAGATTGTTCTATGCTTGTCATGGATGAGGCTGATAAACTTCTCTCCCAGGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCCTCAAACCGTCAAATCCTAATGTTTTCAGCTACATTTCCTGTTACTGTAAAGGACTTCAATGATAGATATCTTCGTAAGCCATATATCATTAACCTTATGGATGAGCTAACTCTCAAGGGTATTACCCAATTTTATGCATTTGTGGAGGAGAGGCAGAAGGTCCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTAGGGTATTCGTGTTTCTACATTCATGCTAAGATGTTGCAAGACCACCGTAATAGAGTTTTTCATGACTTCCGCAATGGTGCCTGCAGGAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATAGATATTCAAGCAGTGAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACATATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGACACCTTGGTTTGGCAGTGAACTTGATAACCTATGAGGACCGCTTCAATTTGTATAGGATTGAGCAAGAACTCGGCACTGAAATAAAACAAATTCCTCCTTTCATTGATCAGGCAATATATTGTCGGTGA 1524 0.4199 MNNRGRYPPGIGLGRGGGGGGGLNSNTGYQQRPHQQQQQYVQRHMVQNQHPQQYQQQNQQNHHYQQQQQQQQQQQWLRRNQLGGTDTNNVEEVEKTVQSEENDTSSQDWKARLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLHQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSQEFQPSIEQLIQFLPSNRQILMFSATFPVTVKDFNDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYCR 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02576 507 CDD DEADc_DDX6 135 335 - -
Trre13g02576 507 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 334 IPR014001 -
Trre13g02576 507 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Trre13g02576 507 Pfam DEAD/DEAH box helicase 158 322 IPR011545 GO:0003676|GO:0005524
Trre13g02576 507 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 280 288 IPR000629 -
Trre13g02576 507 SMART helicmild6 384 465 IPR001650 -
Trre13g02576 507 MobiDBLite consensus disorder prediction 1 76 - -
Trre13g02576 507 FunFam ATP-dependent RNA helicase DDX6 114 337 - -
Trre13g02576 507 Gene3D - 88 337 IPR027417 -
Trre13g02576 507 Gene3D - 338 506 IPR027417 -
Trre13g02576 507 FunFam ATP-dependent RNA helicase DDX6 338 507 - -
Trre13g02576 507 MobiDBLite consensus disorder prediction 23 76 - -
Trre13g02576 507 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 504 IPR001650 -
Trre13g02576 507 SMART ultradead3 152 348 IPR014001 -
Trre13g02576 507 CDD SF2_C_DEAD 345 474 - -
Trre13g02576 507 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 68 506 - -
Trre13g02576 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 487 IPR027417 -
Trre13g02576 507 Coils Coil 54 74 - -
Trre13g02576 507 Pfam Helicase conserved C-terminal domain 359 465 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02576 Trre-Chr13 23630363 23638705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02576 133 497 Eukaryotic Initiation Factors Gene Family AT3G19760 38.692 7.37e-95 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02576 K12614 - tcc:18614173 830.476