Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02559 ATGGATCACGGGGACCATATGCCGTTACCCGGTTCTGCATCTTACTATATGCAGCAGAGAGGACTAGTTGGTTCTGGAGCACAACCCGAGTTACATGTTTCGCCGAGTTTTAATCAACTGTCTAATCCCAATCTACCATTTCAATCCAGCATCGGGGGTGGTAGTAACATTGGATCAACATTACCTTTAGAATCTTTACCAATTTCATCTCAAGGTGTCAATGTCAGTGGTCCTACCGGGGTACCATCTGGGGAGATTGTGAAAAGGAAGAGAGGAAGGCCGAGGAAATACGGTTCTGATAGAGTTGTGTCATTGGCACTGAGTCCAAGTCCAGCACCATCTAGTAATCCCGGAACAATGACGCAAGGAGGCCTGAAACGAGGGAGAGGGCGTCCACTAGGGAGTGGGAAGAAACAACAATTGGCTTCTTTTGGTGAGTCGATGCCTGGTTCAGCTGGGGTGGGATTCACTCCACATGTCGTCCATGTTGCAATTGGTGAAGACATTTCAGCAAAAGTCATAGCATTGTCTCAGATGCGGGCTAGGGCCTTATGTGTCCTTTCCGGTTTTGGCAGTGTCTCAGCTGTCACACTTGGCCAGCCTTCAAGTTCAGGTGGCACTGTCCAATATGAGGGACATTTTGAAATCCTGAGCTTGTCAGGCTCTTTGTTGCCAACTGAGAATGGCAGCATACAGGACCGAGATGGTGGGATAAGTGTTATGCTTTCTAGTCCCGACGGCCGCATCTTTGGTGGAAAAGTTGTTGGGCAGCTAATTGCTTCAGCTCCTACCAAGGTGATGGTTGGGACCTTTCTATGGGGTAGATTGAATGCAAAGAACAAGAAAAAGGAAAGCTCAGAAGATGCTGAAGGTGCTGTGGAATCAGTTCATCAAGGAGCTCATAATCCAGGTGCACTGAATAGCATTTCACCAAACCAAAATCTGACTCCAACCTCATCTTTAAGTCCTTGGTCAGCAGCATCGCGTCCGATGGATATGCGTAATTCTCACGCTGACATTGATTTAATGCGTGGTTGA 1038 0.4759 MDHGDHMPLPGSASYYMQQRGLVGSGAQPELHVSPSFNQLSNPNLPFQSSIGGGSNIGSTLPLESLPISSQGVNVSGPTGVPSGEIVKRKRGRPRKYGSDRVVSLALSPSPAPSSNPGTMTQGGLKRGRGRPLGSGKKQQLASFGESMPGSAGVGFTPHVVHVAIGEDISAKVIALSQMRARALCVLSGFGSVSAVTLGQPSSSGGTVQYEGHFEILSLSGSLLPTENGSIQDRDGGISVMLSSPDGRIFGGKVVGQLIASAPTKVMVGTFLWGRLNAKNKKKESSEDAEGAVESVHQGAHNPGALNSISPNQNLTPTSSLSPWSAASRPMDMRNSHADIDLMRG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02559 345 ProSiteProfiles PPC domain profile profile. 152 294 IPR005175 -
Trre13g02559 345 Gene3D - 158 290 - -
Trre13g02559 345 MobiDBLite consensus disorder prediction 301 326 - -
Trre13g02559 345 MobiDBLite consensus disorder prediction 282 345 - -
Trre13g02559 345 CDD DUF296 157 271 IPR005175 -
Trre13g02559 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 67 319 IPR039605 GO:0003680
Trre13g02559 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 158 271 IPR005175 -
Trre13g02559 345 MobiDBLite consensus disorder prediction 108 122 - -
Trre13g02559 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 156 277 - -
Trre13g02559 345 MobiDBLite consensus disorder prediction 70 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02559 Trre-Chr13 23526141 23530181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02559 1 345 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 44.505 3.91e-74 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02559 - - cam:101500720 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02559 13 23526141 23530181 Trre13g02559 13 23526141 23530181 ECH
Trre13g02559 13 23526141 23530181 Trre15g01190 15 9285275 9288420 PCT