Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02547 ATGCAAAGGCTGGTTGGAATGAGCGAGGATGACGAAGAAGAAATGGGAATGGGTATGAAAGGCGAGGATGACGAGGATGAAGATTATGAGGAAAATGGAGGTGTGCATGGAAATGTTTCAAGGATGGTAGAGATTGATGGTGGGAGTGGGATGGGAACTGGAGCTGGTGACAGTAGGTTTCAGCAGCACCACTTGTTTCAAGAGCAAGTAGGATCTCCGGGTGGAGGTAATCGAAGATCTAGACCGGTAGAAGAGAAAGAGAGAACAAAGCTTAGAGAGAGGCGCCGGAGGGCTATCACTGCAAGGATATTGGCAGGGCTTCGCAGGCATGGAAATTATAATCTTAGAGTTAGGGCTGACATTAATGATGTCATCGCTGCTCTTGCAAGGGAAGCTGGATGGGTGGTTCTTCCCGATGGAACTACATTTCCCTCAAGATCTCAGGGTCAGATGCCAGCTGGTGGCAATTCTGCAGTTGTTGCTTCATCATCATCCCATGTGCCTTCCCAACAGCCTCCATCTGTTTCCCTCAAGGGATTTGCTTCTGACTATGGGAGCCCTTTAGAGTATAATGTATGTTCAATGAAAGGTGTTTTCGTACCAGCTCCATCTCCATCTCCTTATGATCTATCCTCAAGTTCCCGGTCTCAAGCATCTATGGTGGGGGATGGTGAAGCACAGAGAGACAATCCTCCTGTGGTTGGTGGCTCAATAGATACCATTAATGAGAAGCAGATTGTTGACGTTCCACCCAGATTACCAGAACGTGATTTTGCTGGGACCCCATATGTTCCTGTTTATGTGATGCTGCCGTTGGGGGTGATCAATATTAAATGTGAGCTTGTTGATCCGGATGGTCTACTAAAGCAGCTGAAGGTGTTAAAATCAGCAAATGTTGATGGTGTTATGGTAGACTGCTGGTGGGGAATAGTGGAGGCACATGCTCCACAAGAGTATAATTGGAATGGTTACAAGAGACTCTTTCAAATGGTGCATGAGCTTAAGCTTAAGTTGCAGGTTGTCATGTCTTTTCATGAATGTGGAGGCAATTTTGGTGATGATGTTTGTATTCCATTACCCCATTGGGTTGCTGAAATTGGTAGGAGCAATCCAGATATTTTTTTCACAGATAGAGAGGGAAGACACAACCCTGAATGTCTCTCTTGGGGAATAGATAAGGAACGTGTTTTGAGAGGTCGGACTGCTGTGGAGGTTTATTTTGATTTCATGAGAAGTTTCCGGATAGAGTTTGATGAGTATTTTGAGGATGGCTTCATCTCCATGATTGAAGTTGGATTAGGTCCATGTGGAGAGCTAAGATACCCATCTTGTCCTGTAAAGCATGGTTGGAGATATCCTGGTATTGGTGAATTCCAGTGCTATGATCGGTATATGTTGAAAAATCTTAGGAAAGCAGCAGAAGCAAGAGGGCACACTATTTGGGCTAGACGGCCAGATAATGTTGGTACCTATAATTCTCAGCCACACGAAACAGGTTTCTTTTGCGATGGGGGTGATTATGATGGCTTCTATGGTAGGTTTTTTCTCAACTGGTACTCTCAGGCTTTAATTGATCATGGAAACCGAGTACTTTCTCTGGCAAAATTAGCTTTTGAGGGATCCTGCATTGCTGCAAAGCTATCAGGTATTTATTGGTGGTACAAGACTGCTAGTCATGGTGCTGAATTAACTGCTGGGTATTATAATCCATGCAATCGTGATGGCTATGCTCCAATTGTTGCAATGTTAAAGAGAAATGGAGTTAGCTTAAACATTGCTTGTGTTGACCTGCACACGTTGAATCAACATGAGGGTTTTCCAGAGCCATTTGCTGATCCTGAGCGATTAGTTTGGCAAGTGTTGAATGCCGCGTGGGATATTGAACTACCCGTCATCAGCGAGAATTCACTTCCTTGCCTAAACAGAGTTAGCTATAACAAGGTTTTGGACAATACAAAGCCCATGAATGACCCAGATGGAAGGCACTTTTCATCCTTTACATACCTGAGGCTCAGTCCACTTCTGATGGAACGTCAAAACTTCATAGAGTTTGAACGATTTGTCAAGAGAATGCATGGAGAAGCTGTTCTTGATCTTCAGGTATAG 2106 0.4425 MQRLVGMSEDDEEEMGMGMKGEDDEDEDYEENGGVHGNVSRMVEIDGGSGMGTGAGDSRFQQHHLFQEQVGSPGGGNRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSRSQGQMPAGGNSAVVASSSSHVPSQQPPSVSLKGFASDYGSPLEYNVCSMKGVFVPAPSPSPYDLSSSSRSQASMVGDGEAQRDNPPVVGGSIDTINEKQIVDVPPRLPERDFAGTPYVPVYVMLPLGVINIKCELVDPDGLLKQLKVLKSANVDGVMVDCWWGIVEAHAPQEYNWNGYKRLFQMVHELKLKLQVVMSFHECGGNFGDDVCIPLPHWVAEIGRSNPDIFFTDREGRHNPECLSWGIDKERVLRGRTAVEVYFDFMRSFRIEFDEYFEDGFISMIEVGLGPCGELRYPSCPVKHGWRYPGIGEFQCYDRYMLKNLRKAAEARGHTIWARRPDNVGTYNSQPHETGFFCDGGDYDGFYGRFFLNWYSQALIDHGNRVLSLAKLAFEGSCIAAKLSGIYWWYKTASHGAELTAGYYNPCNRDGYAPIVAMLKRNGVSLNIACVDLHTLNQHEGFPEPFADPERLVWQVLNAAWDIELPVISENSLPCLNRVSYNKVLDNTKPMNDPDGRHFSSFTYLRLSPLLMERQNFIEFERFVKRMHGEAVLDLQV 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02547 701 MobiDBLite consensus disorder prediction 206 237 - -
Trre13g02547 701 PRINTS Plant beta-amylase signature 667 681 IPR001371 GO:0000272|GO:0016161
Trre13g02547 701 PRINTS Plant beta-amylase signature 424 433 IPR001371 GO:0000272|GO:0016161
Trre13g02547 701 PRINTS Plant beta-amylase signature 682 696 IPR001371 GO:0000272|GO:0016161
Trre13g02547 701 SUPERFAMILY (Trans)glycosidases 258 697 IPR017853 -
Trre13g02547 701 MobiDBLite consensus disorder prediction 1 93 - -
Trre13g02547 701 MobiDBLite consensus disorder prediction 206 223 - -
Trre13g02547 701 Gene3D Glycosidases 255 700 - -
Trre13g02547 701 MobiDBLite consensus disorder prediction 15 31 - -
Trre13g02547 701 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 240 694 IPR001554 GO:0000272|GO:0016161
Trre13g02547 701 Pfam BES1/BZR1 plant transcription factor, N-terminal 76 209 IPR008540 -
Trre13g02547 701 MobiDBLite consensus disorder prediction 145 174 - -
Trre13g02547 701 MobiDBLite consensus disorder prediction 79 93 - -
Trre13g02547 701 Pfam Glycosyl hydrolase family 14 267 686 IPR001554 GO:0000272|GO:0016161
Trre13g02547 701 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 341 362 IPR001554 GO:0000272|GO:0016161
Trre13g02547 701 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 434 456 IPR001554 GO:0000272|GO:0016161
Trre13g02547 701 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 616 638 IPR001554 GO:0000272|GO:0016161
Trre13g02547 701 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 298 312 IPR001554 GO:0000272|GO:0016161
Trre13g02547 701 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 576 599 IPR001554 GO:0000272|GO:0016161
Trre13g02547 701 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 558 569 IPR001554 GO:0000272|GO:0016161
Trre13g02547 701 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 319 337 IPR001554 GO:0000272|GO:0016161
Trre13g02547 701 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 507 526 IPR001554 GO:0000272|GO:0016161
Trre13g02547 701 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 541 557 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02547 Trre-Chr13 23308212 23315815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02547 46 698 Glycoside Hydrolase AT2G45880 67.580 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Trre13g02547 Glyco_hydro_14 2.7e-102 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02547 K01177 - gmx:100805560 1164.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02547 13 23308212 23315815 Trre13g02547 13 23308212 23315815 ECH