Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02540 ATGGCAAAGAGGTCTCAAAGATTTCCTGTCCAGTATGAGAAAGATCAGTCAGGTTGTATGTGGGGATTCATTAGTATGTTTGATTTTCGCCATGCTCGCTTTACTCGGAAGTTGATCGCTGATAAGAGGCACAACAACAAGCATGCTATTGGTGATGTACTTACCAAGAACAAATTTGAGGTGTTGAGCAATTTGGATGAAGAATATCAAGGCAATACGGACAGAGGAGAGAGTAAGAGACTAACGGTGACAACCGATGCTAACAAGCTTAGTATGAAGAAACTCATAGAAGAAGAGATGTTCATTGACCAGGATGAAATAAAGGATCAAGGTAATGTTGTTGATTCGATACAAACCGAATTAGGGTCTGAAGATTCACTGAAGGCAGATTCCAAAAGAAAAAGAAAATCACGCAAGAAAAGCCGAGATATGGACAGCAATGATTTGAGTGCAACTTTGAAATCTGAAGTCACACATAATCAGCATTTGAAGCAACAATCAAAAGATAATATAGATTTGGACAAGATTATGGAAGACTTTTGTCAAATTGAACATGCTTGTTCCTTGATGCATGATGACGATGATAGCAAAGTTCTTGCTCAATCAAACCAAAAGAATATCAATTCTGAAGAACTTGCAAGAGATGCAATTCATGATTTTGTGAATCAGATGATATTGAATGGGAAAGATATGGTAGAAGATAAAAAATTCCTTTGCTCTCATGAACTCATGGAAACACTTCAGGTTATAAGCTCGGATAAGGAATTGTTTCTAAAACTTCTACAAGATCCAAATTCACACTTACTGAGATATATTCAGGAGTTAGAAAATGCTCAAGGGAGAAGTGTAAAAGAATACAATTCTGTTGCTGATTCCAACTTCTCTGAACAAGACCTTGGCAATCTAAAACAAACTAGAGATATTGTCAACCGCAAGCATCATAAATTTTTCTGGAAAAAGGTAAAGTCTCAATCAAAAGCTCCAACAAATAAAAATGTGAAAACTGAGGTTCCAAATAGAATTGTCATTCTTAAACCTGCACCAACAAGCATGCAAAATTCAGAAAGTGAAAGCAACGTAGTTTCGTCGCTTGATTCTCGTGATATTGTCCATTACAAAGGTCCTTCTGTGAGAGTTGGTTCACCTTTTTCTCTTACAGAAATAAAAAGGAAATTAAAACATGCTATAGGAAAGGAGAAGCATGGAAACCACAAACTCCCTGCTGAGCATCAAAACAATGACTCGAGAGGCAAAGCCATTTGTAAAGATAAAACTGGAATGAAATCTCCCAATAAGGATCATTTTTTCATTGAAAAAATTGCAAGACCTGTGTTTGATGTTGTGAAAGGAAACGAGACTGATATACATGAAAGTGGTTCCACGGAGGAAAAAGTTTCGAACATATACATCCAGGCTAAGAAACATTTATCTGAGATGCTAGTAGATAATGGAGATGATAACACAAGCATTTCTAGCAGGCAGATTCCGAAAACCCTTGGGAGAATACTATCTCTTCCTGAGTACAACTTTTCTCCTCTTGGAAGTCCTGGAGGAAATTTGGAGCATCATTTTTTGACTACACATGCGAGATTATCCACTTCAGATAAAACATGGGAGGTTAATGAGGATAGCTTGTCTTCCAAGCAAGACACCTCTATTGACCAACTCGATCAGGAAACAAACAATTCAAGGAACCAATCAAGCGTTTGTGATAAAAGGTTTAATGAAGTACCAGGAATTGAGTCAGACTCAACTTTTTCACATGATCTTGATCACGTTGATACTGCTGAAGTCAGCTATCATGTTAGAGACGAGATAGTTGCAGAAGGTAATGTAGAATTCACAAAAGATATTATTGTTTTGGAATCTTCGTCAGATCCAAACGGCTGTACTGCAAGGAAGGACCAAAATCATGATGTCTCCAAAATTGCTGTTGATGCTAGATGTTCTGAATGTTTGAATGGGGATTTAAAAGAGAACCTACAATCATCTCCACTGTCATCCCCTTCTCACTCTTCCGTTACTGAGAAAATTGAAGAGCTAGAAAGTTGTACAGATGTATCTGGTCGACCAAGTCCAGTATCTGTGCTCGATATACCGTTCTCTGATGATGACCCTGGCTACTCCACATGTCAGCCTGTTAAATTACGAGTACAACCGCTACAAATTCGATTTGAGGAACAAGACTGTTCATCGATGGATCGATTTCATAGAAGAAAATCTTGTCTGGAAGAAAATGAATTGATATATGACTACATAAATGCTGTCTTCCACGCCGCTAGCTTGACACAAGATCAACTATTGATGAAATGTCTTTCCTCAGATAACATACTAGATCCTTCCTTGTTTGATCAAGTAGAGTTCTTCTCAAACATGCTTTGCCATGAACAGAAGCTCCTATTCGACTGTATCAACGAGGTTCTCATGGAGGTATGTTGGAATTACTTTGGGGTTTCACCTTGGGTATCATTTGTAAGTCCGAGTATAAGGCCGACTCCAAATATGAAGAAGGTTATTCTCAAGGTCTGGGAAGGAGTGTGTTGGCATGTCCGTCATATACCCCCACCGCATACTTTGGAACAAATTGTTAGGAAAGACATGGCAAGAAATGGAACATGGATGGACCTTCGACTCGATGCTGAAACAGTTGGTTTTGAAATGGGTGATGTCATTCTTGTAGAACTGATGGAAGATATAATACTGAGCCTTGTGAATCAAAGTACAGAAAGTTAA 2733 0.3824 MAKRSQRFPVQYEKDQSGCMWGFISMFDFRHARFTRKLIADKRHNNKHAIGDVLTKNKFEVLSNLDEEYQGNTDRGESKRLTVTTDANKLSMKKLIEEEMFIDQDEIKDQGNVVDSIQTELGSEDSLKADSKRKRKSRKKSRDMDSNDLSATLKSEVTHNQHLKQQSKDNIDLDKIMEDFCQIEHACSLMHDDDDSKVLAQSNQKNINSEELARDAIHDFVNQMILNGKDMVEDKKFLCSHELMETLQVISSDKELFLKLLQDPNSHLLRYIQELENAQGRSVKEYNSVADSNFSEQDLGNLKQTRDIVNRKHHKFFWKKVKSQSKAPTNKNVKTEVPNRIVILKPAPTSMQNSESESNVVSSLDSRDIVHYKGPSVRVGSPFSLTEIKRKLKHAIGKEKHGNHKLPAEHQNNDSRGKAICKDKTGMKSPNKDHFFIEKIARPVFDVVKGNETDIHESGSTEEKVSNIYIQAKKHLSEMLVDNGDDNTSISSRQIPKTLGRILSLPEYNFSPLGSPGGNLEHHFLTTHARLSTSDKTWEVNEDSLSSKQDTSIDQLDQETNNSRNQSSVCDKRFNEVPGIESDSTFSHDLDHVDTAEVSYHVRDEIVAEGNVEFTKDIIVLESSSDPNGCTARKDQNHDVSKIAVDARCSECLNGDLKENLQSSPLSSPSHSSVTEKIEELESCTDVSGRPSPVSVLDIPFSDDDPGYSTCQPVKLRVQPLQIRFEEQDCSSMDRFHRRKSCLEENELIYDYINAVFHAASLTQDQLLMKCLSSDNILDPSLFDQVEFFSNMLCHEQKLLFDCINEVLMEVCWNYFGVSPWVSFVSPSIRPTPNMKKVILKVWEGVCWHVRHIPPPHTLEQIVRKDMARNGTWMDLRLDAETVGFEMGDVILVELMEDIILSLVNQSTES 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02540 910 Pfam Domain of unknown function (DUF4378) 751 898 IPR025486 -
Trre13g02540 910 Pfam Protein of unknown function (DUF3741) 222 266 IPR022212 -
Trre13g02540 910 MobiDBLite consensus disorder prediction 124 166 - -
Trre13g02540 910 MobiDBLite consensus disorder prediction 544 568 - -
Trre13g02540 910 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 1 903 - -
Trre13g02540 910 MobiDBLite consensus disorder prediction 542 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02540 Trre-Chr13 23248824 23252427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02540 1 886 TRM (TON1 Recruiting Motif) Superfamily AT4G00440 33.519 1.66e-108 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02540 - - gmx:100783243 1190.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02540 13 23248824 23252427 Trre13g02540 13 23248824 23252427 ECH
Trre13g02540 13 23248824 23252427 Trre15g01165 15 9078078 9089322 PCT