Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02538 ATGTTATTCTCTGTTTTGCTGCTTGGGATTCTTTTACATTGTCATGCAGATGAGGAAAACAAGGTGAAAAAGCCTGCACATATTCCAGCATTTGAGACAATGAGAGGAAAGTGTTTTGAGAAGTGTATTACTAAAGAAGAGGGCTCTTTGAACTTCATTGATGTTGTGCAATATCCAATTGAAGAAGCATTGCAAAGTCACCTATATGAGTTCAAGAATGAAATATACACTTTATCAAAAATTGAGCATCTAAATCTTGTGAGGTTATATGAATATTTGGAGCATGGAAATCAGAAGCTTATTGTTGTTGAGTATGTAGCTAATGGGAATCTTAGAGAACATTTAGATGTGTTTTGTGATTTTTCTGAATCAGTTGGTGGTTGTAGTCAAGCCACTTCTACACAGTTGCACGGTCCCAACATAGCAAAGGAACAAAGAGATGGACGGTCTTACAATAGAGGAGACATGTATGAAATCTCTCACACGAAGAGGAACGGATCATATGTTAATGATGAGGCTCGACAAAAAAATGAAGAGTTACAAAAAGAAAGGCAGACATCATCTGATAATGAGGCTTTTGTGACCGTGTTTGGGAAAGAGCATCATGGTTATGTTCGAGGAATGGGACTTGGTCCAACACCATCTCAAATTAATGGTTCTAGTTGTCGTCCTTCAGGATCAACTTCTTCATCGACTGCTGATGCCAAAATAGCTAAGATGCAAAGCGAAATTGATGTGCTAACTAAAGAAGTTGCTGAAGTTAATGAGCTTAAAGCTAAAGTTGCTGAATTTGATGCAATGAAGGAACAATTTGCTCTTATTATGGCTAATATGCAAAACCATGGGTCTAACATAGGATCACCGTTTGAAGTACGACGCTCTTCTGAGTCTAGTCATAATGTTGAGGGTGATCAAGCAACTCCGGACGTTTAA 933 0.3805 MLFSVLLLGILLHCHADEENKVKKPAHIPAFETMRGKCFEKCITKEEGSLNFIDVVQYPIEEALQSHLYEFKNEIYTLSKIEHLNLVRLYEYLEHGNQKLIVVEYVANGNLREHLDVFCDFSESVGGCSQATSTQLHGPNIAKEQRDGRSYNRGDMYEISHTKRNGSYVNDEARQKNEELQKERQTSSDNEAFVTVFGKEHHGYVRGMGLGPTPSQINGSSCRPSGSTSSSTADAKIAKMQSEIDVLTKEVAEVNELKAKVAEFDAMKEQFALIMANMQNHGSNIGSPFEVRRSSESSHNVEGDQATPDV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02538 310 Pfam Plant transposase (Ptta/En/Spm family) 143 214 IPR004252 -
Trre13g02538 310 Coils Coil 170 190 - -
Trre13g02538 310 MobiDBLite consensus disorder prediction 213 235 - -
Trre13g02538 310 Gene3D Transferase(Phosphotransferase) domain 1 43 131 - -
Trre13g02538 310 MobiDBLite consensus disorder prediction 212 235 - -
Trre13g02538 310 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 70 116 - -
Trre13g02538 310 MobiDBLite consensus disorder prediction 285 310 - -
Trre13g02538 310 Pfam Protein tyrosine and serine/threonine kinase 60 116 IPR001245 GO:0004672|GO:0006468
Trre13g02538 310 Coils Coil 237 257 - -
Trre13g02538 310 MobiDBLite consensus disorder prediction 285 304 - -
Trre13g02538 310 SUPERFAMILY Protein kinase-like (PK-like) 64 122 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02538 Trre-Chr13 23199286 23203402 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02538 70 115 Receptor kinase-like Gene Family AT2G14440 45.652 6.92e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Trre13g02538 Transposase_24 4.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02538 - - tpra:123887282 300.441