Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02536 ATGGCAATACAAAGAAACGGTTCTGTGAGTTCGGTTCGCGAAGTCGGGGGAGAAATTGAAGAGGAACCTAATACAGGTGTGGTTGATGAAGCAATCTATGTTGCTGTGTCAAAGGATGTAAAAGAGAGTAAATTGAATTTGATATGGGCAATACAGAATTCTGGAGGAAAGAAGATCTGTATCCTCTTTGTTCATGTTCCTGCAACAATGATCCCTTTGATGGGTGCTAAATTTCCCGCAAGTTCATTGAAAGATCAGGAAGTCCAAGCTTTCCGGGAAATTGAAAGGAGAAACATGCATAAGACTCTGGATGAATATCTTCGCATCTGTCAGCGGATGGGGGTGCGAGCAGAAAAACTGCATATTGAAATGGATAACATTGAAAAAGGAATTATAGAACTGATTTCCCAGCATGGAATCCGGAAGCTTATTATGGGAGCAGCCTCAGATAAGAATTATTCTAGGAGAATGATGGACCTCAGATCTAGGAAAGCTATCTATGTATGCGAACAAGCTCCAACTTCTTGCCATATACAGTTTATCTGCAAAGGCCACCTTATACATGCAAGGGATCGTAGTTTAGATGAGCGGAACGTAGAGGTTGCATCTCCTTTGACGCCACAAGTGCCAAACTCTGTGAGATCTTTGAGATCTCAATCTATTACACTGGGGCAGAATCATAGGTCAGATTCAAGTAGTTCTATTCAAGGGTTATTTCGCAGAGTGAGGTCTGCCAATGATGGACAGAGAGAAAGTATATCTTCTCCAAATGACACTGGGGGGTTTTCAACTCCATCTAACAGGAGAGGTACAGAAGTAAGTTCTGATGAATCCGATACGCTTTCAAGGACGAGTCCTTCAGGTTTGTCGACATTCTCTGATGGTGCAGTTGAACCAGCACTGACCCCAAATTTGGTTGCCGAGAGCAGTATGAGTGCATTAGACTTGACTTTTAGTCGCCTGGATATAAAGGAAGATCTGCATCATTTATCGCCTCCAAGTGTCCTGGATGGTGGAGTAAATGATACGCTCTATGACCAACTTGAACAGGCTATGTCTGAGGCTAATAATGCTACTCGACATGCATATCAAGAAACTTTCAGACGCGGGAAAGCTGAAAAAGATGCCATTGAAGCTATACGCAGGGCTAAAGCTTCCGAAAGCTTATATAAAGAGGAGTTGAATCAGAGGAAAATGGCGGAGGAAGAACTAAAAAAGGAAAAAGAAGAACTTGAGAGTGTGATGAGGCAGAGAGACAAAGTTAATGAAGAACTCCAACTTGCCTTGGATCTGAAGTCATCACTAGAGAGTCAACTTGCATCGTCTGAAGTCATGATACAGGAGTTGGAACAGAAGATTATCTCGGCTGTGGAACTGTTACAAAGGTACAAGAATGAACGAGATGAATTGCAGATGCAACGCGATAATGCATTGAGAGAGGCTGAAGATCTGAGGAAAAAACAAGGCGAGGGCTCGAGCTCCCATGTTGCTCAATTGTTCTCAGAATTCTCTTTTTCAGAAATTGAAGAAGCAACTAGTAATTTTAATCCATCCCTAAAGATCGGAGAAGGTGGATATGGAAATATATTTAAAGGTCTCCTCCGTCACACCGAAGTCGCTATAAAAGTGTTGCATGCCAACAGCATGCAAGGACCCTTGGAATTTCAGCAGGAGGTGGATGTATTGAGTAAGCTAAGGCATCCCAATCTTATCACTCTTATAGGTGCCTGTCCAGAATCTTGGTCTCTTGTCTATGAGTATTTACCAAATGGAAGTCTTGAAGACCGTCTTGCCTGCAAGGATAACACATCTCCATTATCATGGCAAACACGGATTCGTATTGCTGCAGAACTCTGCTCCGCTCTCATCTTTCTTCATTCGAGTAAACCTCACAGCATAGTACATGGTGACTTGAAACCTTCCAATATAATCCTAGATGCAAACCTTGTCAGTAAGCTTAGCGACTTTGGAATCTGTCGCATATTATCAAATTACGAGAATTCTAGTACTAATAACACACAGTTTTGGAAAACCGATCCAAAAGGGACTTTTGTCTACATGGATCCGGAATTCCTTGCTTCCGGTGAACTCACTCCAAAGTCAGATGTTTATTCATTTGGAATCATATTGTTGAGATTGTTGACCGGGAGACCAGCTTTGGGAATAACTAAGGAAGTGAAATATGCTGTAGATACCGGAAAGTTGACATCTTTATTGGATCCTTTGGCTGGAGACTGGCCATTTGTGCAAGCTGAGCAGTTGGCTCGCTTGGCTTTGCGGTGTTGTGAGATGAACAGGAAGAGTCGGCCAGACCTTCATTCAGATGTCTGGAGGATATTGGATGCAATGAGGGCTTCTTCCGGAGGCACAAACTCCTTTGGTCTAAGTTCGGAAGGGCCTCACCAACCTCCTTCATATTTTATCTGTCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCTGCAGATGGTTTTACATACGAAGCGGAGGCTATCCGAGGATGGCTCGACAGTGGTCATGACACTTCACCAATGACAAATAGTACGCTTTCACATCAGAATCTTGTCCCCAACCGCGGTCTTCGCTCCGCAATCCAGGATTGGCTTCAAAGCCACTGA 2622 0.4333 MAIQRNGSVSSVREVGGEIEEEPNTGVVDEAIYVAVSKDVKESKLNLIWAIQNSGGKKICILFVHVPATMIPLMGAKFPASSLKDQEVQAFREIERRNMHKTLDEYLRICQRMGVRAEKLHIEMDNIEKGIIELISQHGIRKLIMGAASDKNYSRRMMDLRSRKAIYVCEQAPTSCHIQFICKGHLIHARDRSLDERNVEVASPLTPQVPNSVRSLRSQSITLGQNHRSDSSSSIQGLFRRVRSANDGQRESISSPNDTGGFSTPSNRRGTEVSSDESDTLSRTSPSGLSTFSDGAVEPALTPNLVAESSMSALDLTFSRLDIKEDLHHLSPPSVLDGGVNDTLYDQLEQAMSEANNATRHAYQETFRRGKAEKDAIEAIRRAKASESLYKEELNQRKMAEEELKKEKEELESVMRQRDKVNEELQLALDLKSSLESQLASSEVMIQELEQKIISAVELLQRYKNERDELQMQRDNALREAEDLRKKQGEGSSSHVAQLFSEFSFSEIEEATSNFNPSLKIGEGGYGNIFKGLLRHTEVAIKVLHANSMQGPLEFQQEVDVLSKLRHPNLITLIGACPESWSLVYEYLPNGSLEDRLACKDNTSPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNIILDANLVSKLSDFGICRILSNYENSSTNNTQFWKTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYAVDTGKLTSLLDPLAGDWPFVQAEQLARLALRCCEMNRKSRPDLHSDVWRILDAMRASSGGTNSFGLSSEGPHQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSTLSHQNLVPNRGLRSAIQDWLQSH 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02536 873 Coils Coil 341 365 - -
Trre13g02536 873 Coils Coil 383 487 - -
Trre13g02536 873 MobiDBLite consensus disorder prediction 244 296 - -
Trre13g02536 873 ProSiteProfiles Protein kinase domain profile. 515 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02536 873 Gene3D Transferase(Phosphotransferase) domain 1 588 792 - -
Trre13g02536 873 MobiDBLite consensus disorder prediction 248 292 - -
Trre13g02536 873 SMART Ubox_2 806 869 IPR003613 GO:0004842|GO:0016567
Trre13g02536 873 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Trre13g02536 873 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 43 157 - -
Trre13g02536 873 FunFam receptor-like protein kinase FERONIA 479 587 - -
Trre13g02536 873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 801 873 IPR013083 -
Trre13g02536 873 CDD STK_N 32 184 - -
Trre13g02536 873 Gene3D Phosphorylase Kinase; domain 1 485 587 - -
Trre13g02536 873 Gene3D HUPs 31 178 IPR014729 -
Trre13g02536 873 ProSitePatterns Protein kinases ATP-binding region signature. 521 542 IPR017441 GO:0005524
Trre13g02536 873 CDD RING-Ubox_WDSUB1-like 804 859 - -
Trre13g02536 873 PANTHER OS02G0152300 PROTEIN 32 868 - -
Trre13g02536 873 ProSiteProfiles U-box domain profile. 802 873 IPR003613 GO:0004842|GO:0016567
Trre13g02536 873 SUPERFAMILY Protein kinase-like (PK-like) 491 773 IPR011009 -
Trre13g02536 873 Pfam U-box domain 804 873 IPR003613 GO:0004842|GO:0016567
Trre13g02536 873 SMART serkin_6 515 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02536 873 Pfam Protein kinase domain 519 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02536 873 SUPERFAMILY RING/U-box 797 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02536 Trre-Chr13 23163756 23169415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02536 19 873 U-box Gene Family AT2G45910 55.673 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Trre13g02536 Pkinase 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02536 - - gmx:100807515 1372.07