Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02530 ATGGATAAAGAGGAAGCCGCACAAATCCCCAGAAGAACGACAAGGTTGTTATCTTCAACATCCACTTCAAATATTAAACCTGCATCAAAAGAAAACAACGGCCTTGAATCCCTAACAATCAATGATCTTTTGGTTGGAGGAGACCCTATTAGCCTAGATGATATAATTTCCAGTTTTCCTGGTAGAAGTAGTCAGATTCATGAGATTGTGCGTCTTTTAGGACCTTTGAATTCACCGATACTTCCTGTGTTTTTGTACGGAGGTGCTTCAACTGGAAAAACCAGTATCATTCTTCAATTATTCAAACATCTCCAAAGGCCTTTTGTTTATTCTAGTTGTAGGACGTGTTATAACCAACGTATCTTGTTCGAGTCTGTTCTAAATCAGTTACTTCTCCATAGAAAAAATGCTGCCAATTGTTATACAAATGCAAAGCGTTGTGAAAGACCGTCCGATTTTATCAATTTTCTTCGCGAAGCATTGACCAGTGTTATAGACAATCTGAAGGTGAAATCAGAAAAATCAATCTCAGAAAAGGATATACATGGGGGAATGGGAAATATGATCTACTTGGTATTTGACAATTTTCATCTTGTTCGAGATTGGGACAAAAGCTCGACGATATTGCCCTTACTGTTTAATCTCTATGATATGCTAAAGATGCCCGAGGTTGGTCTGATTTTCATCAGCAGTACTTCACCAGATACCTTTTACTCTACTAACATGGGTTATGTGGAGCCTATCCCCATTTACTTTCCGGATTACACAGAAGGCGATATGCGTCAAATCTTATTGAGAAACCAAGCAAACCAGAAGTTGTATTCCTCATTTCTCGATGTAGCTCTGAGGCCTTTCTGCAGAATTACTAGGCAAGTTGGTGAACTGTCTTCTGCATTAAAGCCACTGTTTGAAAAATATAGTGAACCTTTAAGTGATAAGGGAAAGGGAGTTGTTCCTAGTGAAGACATGAAGAGGAGGCTATTCAGTCACATCAAGCCCCATATTGCTTCCTCTCTGAATGATGTATTTAAGGTTTCATATCCTCCTTCAAGTGAAGCTGAGAGTGGTAAAGAGACAAAGCTTAAGGGGAATCTGAAGAGATTGGAGAGATCTGAGGAAATCGGTGATCTTGATTTTCATATGTCCACCAGTGCAAAGTATCTTCTTATTTCTGCATTTCTTGCCTCCAGAAACCCTGCTACTCTTGATGCTTCACTTTTTGATTCCAAAGGTGGTTCTGATAATCGAAAGCGTAAGAGGAAGGCCTCTGAGAAAGCGCTAGAGAAGAAGGAAATGTTAGAAGAGGAACTACTAATGAAAGGACCTGGAACTTTCCCATTGGAGAGATTGATAGCCATCTTTCAGTGTATTGTTTCTGTTGGAGAAGACCCATCTGATGAAGAGGAACAAAACAATGAAGAATCAGGAGCTCAATGTGGCAGCGGTTCACTGATGTCTGATGTTCTTTTGCAGCTATCCACTCTCTGCAATGCTAATTTTATTTTCAAAGGAAAGAGTTGTCCAATTGAAGGCTCGACTCGGTATCGATCAACTATATCTGAAGACCTGGCTTTGAAGGTTGCAAGGAGCCTAAAGTTCCCACTGTCAAAGTATCTGTACAGAAGTTAG 1629 0.399 MDKEEAAQIPRRTTRLLSSTSTSNIKPASKENNGLESLTINDLLVGGDPISLDDIISSFPGRSSQIHEIVRLLGPLNSPILPVFLYGGASTGKTSIILQLFKHLQRPFVYSSCRTCYNQRILFESVLNQLLLHRKNAANCYTNAKRCERPSDFINFLREALTSVIDNLKVKSEKSISEKDIHGGMGNMIYLVFDNFHLVRDWDKSSTILPLLFNLYDMLKMPEVGLIFISSTSPDTFYSTNMGYVEPIPIYFPDYTEGDMRQILLRNQANQKLYSSFLDVALRPFCRITRQVGELSSALKPLFEKYSEPLSDKGKGVVPSEDMKRRLFSHIKPHIASSLNDVFKVSYPPSSEAESGKETKLKGNLKRLERSEEIGDLDFHMSTSAKYLLISAFLASRNPATLDASLFDSKGGSDNRKRKRKASEKALEKKEMLEEELLMKGPGTFPLERLIAIFQCIVSVGEDPSDEEEQNNEESGAQCGSGSLMSDVLLQLSTLCNANFIFKGKSCPIEGSTRYRSTISEDLALKVARSLKFPLSKYLYRS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02530 542 MobiDBLite consensus disorder prediction 1 31 - -
Trre13g02530 542 MobiDBLite consensus disorder prediction 405 426 - -
Trre13g02530 542 Pfam Origin recognition complex (ORC) subunit 5 C-terminus 250 539 IPR047088 -
Trre13g02530 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 326 IPR027417 -
Trre13g02530 542 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 5 51 541 IPR020796 GO:0000808|GO:0005634|GO:0006260
Trre13g02530 542 Pfam AAA ATPase domain 59 215 IPR041664 -
Trre13g02530 542 MobiDBLite consensus disorder prediction 12 31 - -
Trre13g02530 542 MobiDBLite consensus disorder prediction 410 426 - -
Trre13g02530 542 FunFam Origin of replication complex subunit 5 59 240 - -
Trre13g02530 542 Coils Coil 416 436 - -
Trre13g02530 542 Gene3D - 59 240 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02530 Trre-Chr13 23100183 23102325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02530 3 541 Core DNA Replication Machinery Family AT4G29910 59.259 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02530 K02607 - gmx:100782175 805.438