Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02520 ATGGGATTGGACTCATTGCAGCAGCAGCAGCAGATGATAGGTTCTTCGAGACAGTCATTTCAACAGCAACTGCTTAGAAAACCTGAAGGGAGTGAAGCAGTGCTGGCATATCAAGCAGGGCTTCAAGGAGTATTTGGGAATAACAATTACTCATCTCCTACTGCTATGCAATTGCCTCAGCAGTCTCGGAAATTTATTGATTTAGCTCAGCATGGACTCAACCAGGGTCAAAGCATTGAGCAACAAATGTTAAATCCTGTTCAACAAGCTTATTATCAATACGCTCCCCAGAGTTCTCAACAAAAGTCTACTTTGGCAATGCAGCAATCTAAAATCGAAATGTCAGGCCCCACGTCTGTTAAGGATCAAGAAATGCGAATGGGGAATTTTAAATTGCAGGACCTTATGTCTATGCAGGCAATGAATCATGGCCAGGGATCATCTAGGAATTCATCTGAACATTTTTCTCTTGGTGAAAAGCGGATAGAGCAAGGGCAGCAGCTAGCTCCTGATAAGAAGAATGAAGGAAAGCAACCAACTCAGGGACCAGCCATTGGACACTTGATGCCGGGGAATATTATAAGGCCTGTGCAAGCACCAGCAACTCAGCAGAACATCCCAAATGCTTTGAACAACCAAATTGCTATGGCTGCTCAACTACGAGGTATGCAGGCATGGGCGCATGAACGGAACATTGATCTGTCACAACCTGCTAATGCTAACTTAGTGGCTCAGGTCATTCCCTTGATGCAATCAAGGATGGTTCAACAACAAAAGGAAAACAATACTAACATTGGTGCTCAGTCATCTCCTCTCCCCGTTTCAAACCAGCAGGTTACTTCTCCGGCAGTTGCAAGTGAGGGATCTGCTCGTGCTAATTCATCTAGTGATGTGTCTGAACAGGCAGTTTCTGCTAAAGCCAAACAGACAGCTCCACCCATCCATTTGGGCTTACCCATCAGTTCTGGTATGGCTAGTAACTCCAGTGACATGGCAGTGCAGCAATTCAGTCGTCATGGTAGAGATGCTCAAGGATCTTTAAAGCAATCCATTGTAGTTGGAAACGGAATGCCTTCTATGCATCCACAGCAGTCTTCTGCAAACATGAACTTAGGTACAGATAGTTCTTCGAATCCAAAAGCTTCATCATCTGGATCTGGTCCAGAACCTGCAAAAATGCAGTACATCAAGCAATTAAACCAACATGCTTCCCAGGTAGGAGGGCTAACAAAGGAAGGGGGCACCGGAAATTATACCAAACCTCAAGGGGCACCGTCTCAGACGCCTCAAAAAGTAAATGGTTTTACCAAGCATCAGCTTCATGTTCTTAAAGCACAGATACTAGCATTTAGGCGGCTGAAGAAAGGAGAAGGTACACTTCCCCAAGAACTTCTTCAAGCCATTATTCCACCGCCTCTTGATTTGCAAGTGCAGCCGCCAATTCACTCTGCAGGAGGACAGAATCAAGACAAATCTGTTGGAAATACTGTGGCAGAACAACCAAGGCAGAATGAATCCAATGTCAAGGATTCACAACCTATCACATCCATTGTTGGAAATTCTTCAAAGCAGGAAACTTTTGTAAGAGATCAGAAATCCACAGGAGCAGCAGTTCATATGCAAGCTACGCCTCCTGTGACAAAGGGCTCTGCTGGAAAGGAAGAGCAGCAATCCGTTGGATGCTTTGCTAAGTCAGACCAGGAAAGTGAACATGGGGTTAACAGAGCTCCTGTTAGAAATGAGTTGGCAATAGATAAGGGAAAGGCCATTGCCTCCCAGGCTTCGGTAACTGACACTGCACAGAGTAATAAACCTGCACAATCAAGCATTGTTGCTCAGCCAAAGGATACAGGACCCACCAAAAAATATTATGGGCCCCTATTTGATTTTCCTTTCTTCACTAGGAAACAAGATTCCTTTGGATCATCAATGATGGCAAATAACAACAATAATTTGTCACTGGCATATGATGTAAAAGAGCTTCTTTATGAGGAGGGCATGGAGGTCTTTAACAAGAGAAGGACGGAGAATTTAAAGAAGATTGAAGGATTACTTGCGGTAAATTTAGAGAGAAAAAGAATTCGGCCAGATCTTGTCTTGAGGTTGCAAATTGAAGAGAAAAAGCTTCGCCTTTTAGATCTTCAGGCACGTTTAAGAGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCTTATCGCAAGTTTGTTAAGCTGTGTGAACGACAGCGGGTAGAACTCGCTAGACAAGTGCAGGCATCTCAGAAGGCTTTTAGGGAGAAGCAACTGAAATCTATATTCCAATGGCGCAAGAAGCTTCTTGAAGTTCACTGGGCCATTCGTGACGCTCGTACTGCTCGCAACAGAGGGGTTGCCAAATATCATGAGAAGATGTTGAAAGAATTCTCGAAACATAAGGATGATGACAGGAACAAGAGGATGGAGGCCTTAAAAAACAACGATGTTGACAGATATAGGGAGATGTTACTGGAGCAACAGACTAGCCTTCCAGGTGATGCTACGGAGAGATACAATGTACTTTCAACATTCTTAACCCAGACTGAAGAGTATCTTCAAAAATTAGGAAGTAAGATAACTTCTGCCAAAAATCAACAGGAAGTGGAAGAGGCAGCAAAAGCTGCAGCAGCTGCAGCACGATTACAGGGTCTTTCTGAAGAAGAAGTCAGAGCTGCGGCAGCTTGTGCTGGAGAGGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTAAAGATGGCTCGTCTTCTGTCAGCAAGTATTACAACCTTGCTCATGCTGTAAATGAAAAAGTTTTTAGGCAGCCATCAATGTTGCGGGCTGGAACACTGAGAGAGTATCAGATTGTTGGATTGCAATGGATGCTTTCTTTGTACAACAACAAATTAAATGGAATTTTGGCTGATGAGATGGGTCTTGGCAAAACAGTCCAGGTTATGGCGTTAATTGCCTACTTAATGGAATTTAAAGGAAACTATGGCCCACATCTTATAATTGTTCCAAATGCCGTTTTGGTTAACTGGAAGAGTGAATTGCATACATGGTTACCATCTGTGTCATGCATTTTTTATGTTGGAACAAAGGATCATCGGTCAAAATTATTTTCTCAAGAGGTTATGGCTATGAAATTTAATGTCCTTGTGACTACTTATGAGTTCATCATGTTTGACCGAGCAAAGCTTTCAAAAATTGATTGGAGGTATATCATAATTGATGAAGCTCAGAGAATGAAGGATAGAGAGTCAGTTTTAGCTCGTGATCTTGATAGATATCGGTGTCACAGACGCCTGCTTCTGACAGGAACACCTTTACAGAATGATTTGAAGGAACTTTGGTCACTTTTAAATCTACTTCTTCCCGAGGTTTTTGACAATAAGAAAGCCTTCAATGATTGGTTCGCAAAACCATTTCAAAAGGAAGATCCCAATCAAAATGGAGAGGATGATTGGCTTGAGACAGAGAAGAAAGTTATCATTATCCATCGGCTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGAGGTTGAAGGCTCGCTACCTCCAAAGGTATCCATAGTTTTACGATGTAGAATGTCAGCCTTCCAGAGTGCCATTTATGACTGGATTAAATCGACCGGAACCCTTCGCCTTAATCCTGAGGAGGAGAAACGTCGGATGGAGAAAAGTCCGCTCTACCAGGCAAAACAGTATAAAACTTTAAATAACAGATGCATGGAGCTACGTAAAACTTGCAATCATCCATTGCTTAATTACCCATTCTTTAGTGACTTATCTAAAGATTTTATGGTAAAATGTTGTGGGAAATTATGGATGTTGGATAGGATTCTCATAAAACTTCAAAGAACTGGACATCGAGTTCTGCTGTTCAGTACCATGACAAAACTCCTAGACATATTGGAAGAGTACCTGCAATGGAGAAGACTTGTGTACAGAAGAATCGATGGTACAACAGCTTTAGAAGATCGTGAATCAGCTATAGTGGACTTCAATAGCCCTAATTCGGACTGTTTCATCTTCTTGCTTAGTATTCGGGCTGCTGGGAGAGGGCTTAACCTTCAGTCTGCTGATACAGTTATCATTTATGATCCTGACCCGAACCCTAAAAATGAGGAGCAGGCTGTGGCCAGAGCTCATCGCATTGGACAAAAAAGAGAAGTCAAAGTTATCTACATGGAAGCTGTTGTTGACAAAATCTCTAGCCATCAGAAGGAGGATGAACTGAGAAATGGAGGCACTGTTGATATGGAGGATGAGCTTGCAGGTAAGGATCGTTATGTAGGATCCATTGAGAGCCTCATAAGGAGCAGTATTCAACAGTATAAGATAGATATGGCTGATGAGGTTATTAATGCTGGACGTTTTGATCAAAGGACAACACATGAAGAGAGACGTTTGACTTTGGAGACATTATTGCACGATGAAGAAAGGTGTCAAGAAACTGTGCACGATGTTCCTTCATTGGAGGAAGTAAATCGCATGATTGCTCGGAATGAAGAAGAAGTTGAATTATTTGATCAAATGGATGAAGAAGAGGATTGGCTTGAGGAGATGACTCAGTATGATCAGGTGCCTAAGTGGCTTCGCGCCAGTACAAGAGATGTGAATGCTGCTATTGCTGCTTCGTCAAAAAGACCATCAAAGAAGAACGCTTTATCGGGTGGTAATGTTGGCTTGGAATCCAATGAAGTGGGTTCTGAAAGGAGAAGGGGACGACCAAATGGAAAAAATCCTAATTATAAAGAGTTGGAAGATGAAATTGAAGAATCCTCTGAAGAAATATCTGAAGACAGAAATGAAGATTCTGCACATGATGGAGGGGAGATTGGAGAGTTTGAAGATGATGGGTATAGTGGGGCTGATGTAGCTCAACACATGGATAAAGATAAGTGGGAAGATGTTACTCCTGATGCTGAATATGAATTTCCTAGGTCTTTAGGAGGTGCTAGAAGCAATCATGTGGTTGAAGAAGGTGGTTCTTCGGCATCATCCGCAGAAGGTCAAAGATTGACACAAACAGTGTCACCATCAGTTTCTTCTCGGAAATTTGGTTCCTTGTCTGCACTAGAGGCCAAGCCAAGATCGGTCTCAAAAAGGACGGGAGATGAGTTAGAGGAAGGGGAAATTGCAGTATCTGGTGAGTCTCACATGCATCATCAACAGTCAGGAAGTTGGATTCATGATCGTGATGAAGGTGAGGAAGAGCAAGTTTTGCAGAAACCCAAGATTAAACGTAAACGTAGTCTTCGTGTTCGGCCTCGTCACACCATGGAAAGGCTTGAGGATAAGCCTGGCAGTGAGATGGCATCTCTTAACCGTGGAGAATCATCTATTTTATCAGGCAATAAATATCCATTGCAAACAAGGATGGACCCAGAATCAAAACTATTTGGAGATTCCAGTTCCAGCAAGCATGACAAGAATGAATCAATATTAAAAAACAAGCGAAATTTACCTTCAAGGAAAGTAGCTAATGCATCCAAATTACATGTCCCACCTAAGTTCAGTCGCTTGAACACGGACGCTCCTTCGGAAGATAATGGTGAGCACTCTAGAGAAAGTTGGAAGGGGAAGCTTAACAATAGTGGATCATCATCTCATCGCCCTAAAATGACTGAAATCATCAAGAGAGGGTGCAAAAATGTAATTAGCAAGCTCCAGAGGAGAATAGATAAGGAAGGCCATCAAATTGTACCTTTGCTGGCAGATTTATGGAAGAGGATTGAGAATTCTGGGTTCGCTGGTGGTACTGGGAACAATCTCTTGGATTTAAGAAAGATTGACCAGCGAATTGATAGATTGGAGTACAGTGGAGTAATGGAGCTTGTTTTTGATGTGCAATTTATGTTGAAGAATGCAATGCATTTCTATGGGTACTCATACGAGGTAAGATCTGAAGCAAGGAAGGTTCATGATCTCTTCTTTGACATCTTGAAAATTGTATTTTCCGATATTGACTTCGGAGATGCAAGAAGTGCACTTTCTTTTTCTAGTCAAATTTCTGCCAGCACTGTAGCATCCCCCAGGGAAGTGACTGTTGGTCCAAGTAATAAGAGAAAGAGAGGGAAGACTGATACGGAGACTGATCCATTCCCTACACAAAAGACACTGCAGCGTGGATCCACTTCCAACGGTGAAAGTGGCAGGATCAAAGTCCAATTACCACAGAAGGTATCAAGAACTGGAAGTGGTAGTGGCAGTGCCAGGGAGCAAACTCAACAAGATAGTCCTTTGCTGCTTGTTCACCCGGGTGAACTTGTTGTATGCAAGAAGAAAAGAAATGAGAGAGAAAAACCACCGGTAAAGCCAAGGATTGGATCAACTGGTCCTATTTCACCACCTAGCATGATTCCAGCTATGAGAAGTCCAACCTCAGGGTCAGGTTCTTCTACCCCTAGGGCTGGCAATGCACAGAGACCAAATGGGTCTGGCTTGTCAATTGGATGGGCAAATTCCGTGAAGCGGATGAGAACAGATTCTGGGAAGAGGAGACCAAGTCATAGGTAG 6549 0.4277 MGLDSLQQQQQMIGSSRQSFQQQLLRKPEGSEAVLAYQAGLQGVFGNNNYSSPTAMQLPQQSRKFIDLAQHGLNQGQSIEQQMLNPVQQAYYQYAPQSSQQKSTLAMQQSKIEMSGPTSVKDQEMRMGNFKLQDLMSMQAMNHGQGSSRNSSEHFSLGEKRIEQGQQLAPDKKNEGKQPTQGPAIGHLMPGNIIRPVQAPATQQNIPNALNNQIAMAAQLRGMQAWAHERNIDLSQPANANLVAQVIPLMQSRMVQQQKENNTNIGAQSSPLPVSNQQVTSPAVASEGSARANSSSDVSEQAVSAKAKQTAPPIHLGLPISSGMASNSSDMAVQQFSRHGRDAQGSLKQSIVVGNGMPSMHPQQSSANMNLGTDSSSNPKASSSGSGPEPAKMQYIKQLNQHASQVGGLTKEGGTGNYTKPQGAPSQTPQKVNGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLQAIIPPPLDLQVQPPIHSAGGQNQDKSVGNTVAEQPRQNESNVKDSQPITSIVGNSSKQETFVRDQKSTGAAVHMQATPPVTKGSAGKEEQQSVGCFAKSDQESEHGVNRAPVRNELAIDKGKAIASQASVTDTAQSNKPAQSSIVAQPKDTGPTKKYYGPLFDFPFFTRKQDSFGSSMMANNNNNLSLAYDVKELLYEEGMEVFNKRRTENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQARLRDEIDQQQQEIMAMPDRPYRKFVKLCERQRVELARQVQASQKAFREKQLKSIFQWRKKLLEVHWAIRDARTARNRGVAKYHEKMLKEFSKHKDDDRNKRMEALKNNDVDRYREMLLEQQTSLPGDATERYNVLSTFLTQTEEYLQKLGSKITSAKNQQEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFMEMNAPKDGSSSVSKYYNLAHAVNEKVFRQPSMLRAGTLREYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIFYVGTKDHRSKLFSQEVMAMKFNVLVTTYEFIMFDRAKLSKIDWRYIIIDEAQRMKDRESVLARDLDRYRCHRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFNDWFAKPFQKEDPNQNGEDDWLETEKKVIIIHRLHQILEPFMLRRRVEEVEGSLPPKVSIVLRCRMSAFQSAIYDWIKSTGTLRLNPEEEKRRMEKSPLYQAKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKDFMVKCCGKLWMLDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTALEDRESAIVDFNSPNSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRNGGTVDMEDELAGKDRYVGSIESLIRSSIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERCQETVHDVPSLEEVNRMIARNEEEVELFDQMDEEEDWLEEMTQYDQVPKWLRASTRDVNAAIAASSKRPSKKNALSGGNVGLESNEVGSERRRGRPNGKNPNYKELEDEIEESSEEISEDRNEDSAHDGGEIGEFEDDGYSGADVAQHMDKDKWEDVTPDAEYEFPRSLGGARSNHVVEEGGSSASSAEGQRLTQTVSPSVSSRKFGSLSALEAKPRSVSKRTGDELEEGEIAVSGESHMHHQQSGSWIHDRDEGEEEQVLQKPKIKRKRSLRVRPRHTMERLEDKPGSEMASLNRGESSILSGNKYPLQTRMDPESKLFGDSSSSKHDKNESILKNKRNLPSRKVANASKLHVPPKFSRLNTDAPSEDNGEHSRESWKGKLNNSGSSSHRPKMTEIIKRGCKNVISKLQRRIDKEGHQIVPLLADLWKRIENSGFAGGTGNNLLDLRKIDQRIDRLEYSGVMELVFDVQFMLKNAMHFYGYSYEVRSEARKVHDLFFDILKIVFSDIDFGDARSALSFSSQISASTVASPREVTVGPSNKRKRGKTDTETDPFPTQKTLQRGSTSNGESGRIKVQLPQKVSRTGSGSGSAREQTQQDSPLLLVHPGELVVCKKKRNEREKPPVKPRIGSTGPISPPSMIPAMRSPTSGSGSSTPRAGNAQRPNGSGLSIGWANSVKRMRTDSGKRRPSHR 2182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02520 2182 MobiDBLite consensus disorder prediction 2100 2116 - -
Trre13g02520 2182 Pfam SNF2-related domain 958 1262 IPR000330 GO:0005524|GO:0140658
Trre13g02520 2182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 932 1185 IPR027417 -
Trre13g02520 2182 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1286 1463 IPR001650 -
Trre13g02520 2182 SUPERFAMILY Bromodomain 1936 1998 IPR036427 GO:0005515
Trre13g02520 2182 Pfam QLQ 435 468 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre13g02520 2182 ProSiteProfiles QLQ domain profile. 434 470 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre13g02520 2182 MobiDBLite consensus disorder prediction 1784 1798 - -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 2132 2162 - -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 1768 1782 - -
Trre13g02520 2182 Pfam Helicase conserved C-terminal domain 1286 1396 IPR001650 -
Trre13g02520 2182 CDD SF2_C_SNF 1281 1406 - -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 264 391 - -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 321 389 - -
Trre13g02520 2182 SMART QLQ_2 433 470 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre13g02520 2182 MobiDBLite consensus disorder prediction 2043 2092 - -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 1812 1830 - -
Trre13g02520 2182 FunFam Brahma1 1884 2007 - -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 1735 1756 - -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 1611 1625 - -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 1670 1698 - -
Trre13g02520 2182 Coils Coil 1594 1614 - -
Trre13g02520 2182 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 967 1132 IPR014001 -
Trre13g02520 2182 Gene3D - 946 1194 IPR038718 -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 1560 1574 - -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 595 615 - -
Trre13g02520 2182 SMART helicmild6 1312 1396 IPR001650 -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 1709 1727 - -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 1577 1598 - -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 2028 2042 - -
Trre13g02520 2182 Gene3D - 1195 1405 IPR027417 -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 264 306 - -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 481 516 - -
Trre13g02520 2182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1189 1526 IPR027417 -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 167 187 - -
Trre13g02520 2182 PANTHER SNF2/RAD54 HELICASE FAMILY 686 1653 - -
Trre13g02520 2182 SMART bromo_6 1882 1997 IPR001487 GO:0005515
Trre13g02520 2182 SMART ultradead3 951 1140 IPR014001 -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 2020 2182 - -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 1553 1884 - -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 476 516 - -
Trre13g02520 2182 FunFam ATP-dependent helicase BRM 1195 1405 - -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 1632 1653 - -
Trre13g02520 2182 MobiDBLite consensus disorder prediction 407 432 - -
Trre13g02520 2182 Coils Coil 704 728 - -
Trre13g02520 2182 Gene3D - 1884 2024 IPR036427 GO:0005515
Trre13g02520 2182 FunFam ATP-dependent helicase BRM 946 1194 - -
Trre13g02520 2182 Coils Coil 1502 1522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02520 Trre-Chr13 23024958 23035898 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02520 1292 1403 RAD5 or RAD16-like Gene Family AT5G43530 43.750 2.41e-17 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre13g02520 SNF2_N 3.2e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02520 - - gmx:100811608 3291.52