Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02518 ATGTTGGGTAATGAGCAACCGTTGGATTTGTATAAGCTGTTCATGGTGGTGAAGGATAAAGGTGGTTATGATGTTGTTTGTAAGAACAGGTTGTGGGATTTGGTTGGGGAAGAATATGGGTTGGGTGTGAAAGTTGGTTCATCTGTTGAACTTGTTTATAGTAAGTATTTGAGTACTTTAGAGACGCCGTTGAAGAATGCTGTTGACGGTGAGTTTCCTAAGTGTGATTTAGTGGATGATAGAGTTAAATTTGGCGAGCGTTTAATGGAGTTGCAAGCTGAATTCTTGCTTGATGATTACGGTGAGGAAGATGCGGGGGATAGTGTATATGAATGTAGGAGGAAGTTGTGTAATAGAGTCAAGGGTGTGAATCCAGAGTTGAATACGGCGGAACTTGAAAGGGTATATGACTACATAGATGGGAGGAAGTTGTGTGGTACTAATAGAGTGAAGGATGTGAATCTTGAGTCTAATGCGGTGTGTATGCAGGATTGTAAGAAGAACGAGACTAGTCTCAGAAAGTTGGTTAACCATAATGCTGCAATGGAAATAATGGAAGGGTTTGATGGGGGCAAAATATTAGCAATGGATGATGGATCCGATGCAGCAAACAGCATGCCCGGATTGTCCGATGGAAGCAAGAGTTGTGCTAATGATGACGCTAATGATAGTGGTGACGATGTCTTGGTGTTGGAACCATCTAGTGTTAATAGAGCGAGCTTTGGTCGTAAGAGGAAGAGAGACGCGATGACAGAAATGCTAAGTTGGGTTACTAGCACTGCAAAGAATCCCTGTGATCCGGTGATAGGTTCAATGCCCGAAAAGCCAAAGTGGAAGTCTTACGGTAATCAAGAGATCTGGAAGAAGGTTTTGTTGTTCCGTGAAGCTGCCTTTTTGAAAAGAGATTTTGGATCAAACTGTGAAAAACTCAGTTGGCAGGCTCAGAGGATGCATCCTTGTATGTATGATGATAACCTTGGGACAAATTACAATCTTAGACAAAGGATCAAATGTGACAATGGACTTTTAGCTGGAAAATCTTCATCTGCTTTGCAAAGAACACCAAGCTCTGATACTGAGAATAGTGCCAAGAAAAAGTTATTTGACTCTGGTGATTCACAATCAAGTCTTGATACACCTCCCACTGTGAACATCCCTCTCGGGCCAAACCATCAAACTGAAGTGCCCGAATGGACTGGCACAATTCACGAGAGTGATTCTAAGTGGTTAGGAACCCAAATATGGCCACTAAAAACTGTAAAATCCAACTTTTTGGAATGGGAGCATGTAGGACAGGGTAGACAAGACTCATGTAGTTGCAAAGTGCAAGGTTCGGTCGAGTGTGTTCGATGTCATATTGCTGAGAAAAGATCTAAACTCAAGCTGGAGCTTGGTGTGGCCTTCTACCAGTGGAGTTTAGACAAGGTAGGTGAAGAGGTAGGGCGATGGTGGACACAGCAAGAACAGAAGAAGTTCAAAGATGCAGTGAAATCAAACCCTGCTTCGCTTGATAGATTTTTCTGGGATAATATTTTCAAAACATTTCCTAAGAAGAGCAGGGAAAATTTAGTCAGCTATTACTTCAATGTGTTTCTTTTGCAGCGCAGAGCATACCAGAACAGACACACTCCTGATAACATTGACAGTGATGATGAAGAATCAGAATTTACATCATTGAGGGGTATTTTTGGACATCAAACTAATAAACCAAACAGCATCACCATATTATCTCCTAAGAAGCCACAGACAAAGCCACATACAAAAGGAAGATAG 1773 0.4174 MLGNEQPLDLYKLFMVVKDKGGYDVVCKNRLWDLVGEEYGLGVKVGSSVELVYSKYLSTLETPLKNAVDGEFPKCDLVDDRVKFGERLMELQAEFLLDDYGEEDAGDSVYECRRKLCNRVKGVNPELNTAELERVYDYIDGRKLCGTNRVKDVNLESNAVCMQDCKKNETSLRKLVNHNAAMEIMEGFDGGKILAMDDGSDAANSMPGLSDGSKSCANDDANDSGDDVLVLEPSSVNRASFGRKRKRDAMTEMLSWVTSTAKNPCDPVIGSMPEKPKWKSYGNQEIWKKVLLFREAAFLKRDFGSNCEKLSWQAQRMHPCMYDDNLGTNYNLRQRIKCDNGLLAGKSSSALQRTPSSDTENSAKKKLFDSGDSQSSLDTPPTVNIPLGPNHQTEVPEWTGTIHESDSKWLGTQIWPLKTVKSNFLEWEHVGQGRQDSCSCKVQGSVECVRCHIAEKRSKLKLELGVAFYQWSLDKVGEEVGRWWTQQEQKKFKDAVKSNPASLDRFFWDNIFKTFPKKSRENLVSYYFNVFLLQRRAYQNRHTPDNIDSDDEESEFTSLRGIFGHQTNKPNSITILSPKKPQTKPHTKGR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02518 590 CDD SANT 484 531 IPR001005 -
Trre13g02518 590 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Trre13g02518 590 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 583 - -
Trre13g02518 590 CDD ARID 6 61 - -
Trre13g02518 590 Pfam ARID/BRIGHT DNA binding domain 4 60 IPR001606 GO:0003677
Trre13g02518 590 Gene3D - 1 71 IPR036431 GO:0003677
Trre13g02518 590 MobiDBLite consensus disorder prediction 563 590 - -
Trre13g02518 590 SUPERFAMILY ARID-like 5 68 IPR036431 GO:0003677
Trre13g02518 590 MobiDBLite consensus disorder prediction 347 394 - -
Trre13g02518 590 MobiDBLite consensus disorder prediction 563 581 - -
Trre13g02518 590 SMART bright_3 2 66 IPR001606 GO:0003677
Trre13g02518 590 MobiDBLite consensus disorder prediction 368 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02518 Trre-Chr13 23009505 23014368 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre13g02518 ARID 2.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02518 - - tpra:123892530 1123.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02518 13 23009505 23014368 Trre13g02518 13 23009505 23014368 ECH