Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02514 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACATCATTTGCAAGGAACACCGGTGTATTACTATTGCCCACCAACTTTAGAAGAGCGCGAGTTTTTAACCTCTAATGATGGTACCGCTGCTTCGCTCGCTGCTGGATATCTGGTTGGGTTGAACCTAGAAGCATCCATACCTGATACATTCCGCTCTCCTCCTGTGCCTCTTCCGTACGACATTGTCTTTGGAGGTTCTGCGTCAACTGATTCTGAGTCTGGCAGAGAAACAGTTAGTGTTAGTAGTTTTGAAACTTCAATTACACGTGATGATATTGAAGAATCGGATTGTAAAGTTCAAACCAAATCTGCACCTATATCTCCAAGGAAGGTAGAACTATCAAAATCAAATGGAACTCAAGTATTGGTAACAGAAGAAGAGGATGTCTGCCCAATTTGTCTCGAAGAATATGATGACGAGAATCCTAAAAATTTGACAAAATGTGAACATCATTTTCATCTATGTTGCATTCTTGAATGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTTGA 561 0.4082 MGGCCCSARKHHLQGTPVYYYCPPTLEEREFLTSNDGTAASLAAGYLVGLNLEASIPDTFRSPPVPLPYDIVFGGSASTDSESGRETVSVSSFETSITRDDIEESDCKVQTKSAPISPRKVELSKSNGTQVLVTEEEDVCPICLEEYDDENPKNLTKCEHHFHLCCILEWMERSDSCPICDQEMIF 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02514 186 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Trre13g02514 186 SMART ring_2 140 180 IPR001841 -
Trre13g02514 186 Pfam RING-H2 zinc finger domain 136 180 IPR024766 GO:0008270
Trre13g02514 186 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 39 185 - -
Trre13g02514 186 CDD RING-H2_AIRP1-like 136 184 - -
Trre13g02514 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 185 IPR013083 -
Trre13g02514 186 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Trre13g02514 186 SUPERFAMILY RING/U-box 134 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02514 Trre-Chr13 22951818 22953484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02514 1 186 C3H Transcription Factor Family AT4G00335 56.452 2.42e-71 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02514 - - gmx:100812687 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02514 13 22951818 22953484 Trre13g02514 13 22951818 22953484 ECH
Trre13g02514 13 22951818 22953484 Trre15g01144 15 8864610 8867162 PCT