Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02507 ATGAGCTTTCCCGTAGGGTACCCTGAAGTTTCCGTCCCCAACCTCTTCCTCTACATTCTCTCTCTCCTCGCCTTTCTAAGATCCATAGCTATAACCTTCCTTTCCCTCCTCCATCTCTCCGACATCCTCGACACCGATTTCTCCGCCGTCTCTTCACCTGAATCCTACCTCCACCGTCCCACTCTCTCTGCAATCCTCATCCGTGAATTCCTCCCTGTAGTCAATTTCAGTGACATCGCCGGAGACTCGCCGCCGGCAGTGGGATGTGCGGTCTGTTTAAATGAATTCGCCGGAGAAGAAGAGATCAGGTGTATGGCGAACTGTAGACATATTTTTCATCGGACGTGTGTAGACCGTTGGATTGATCATGATCAGAAGACGTGTCCACTTTGTAGAACCCACTTTGTACCTTATCATAAAATGGAAGATTATAATCAACGGTTATGGGCTGCTTCTTTATCTGATGATGATGATTATGATGTTTCTCTTTTTTCTCAACATGATGACCACATTGCTACTTCTTCATTCTGA 531 0.4633 MSFPVGYPEVSVPNLFLYILSLLAFLRSIAITFLSLLHLSDILDTDFSAVSSPESYLHRPTLSAILIREFLPVVNFSDIAGDSPPAVGCAVCLNEFAGEEEIRCMANCRHIFHRTCVDRWIDHDQKTCPLCRTHFVPYHKMEDYNQRLWAASLSDDDDYDVSLFSQHDDHIATSSF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02507 176 PANTHER RING ZINC FINGER PROTEIN-RELATED 29 153 - -
Trre13g02507 176 SUPERFAMILY RING/U-box 88 144 - -
Trre13g02507 176 SMART ring_2 89 131 IPR001841 -
Trre13g02507 176 Pfam Ring finger domain 89 132 IPR001841 -
Trre13g02507 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 137 IPR013083 -
Trre13g02507 176 ProSiteProfiles Zinc finger RING-type profile. 89 132 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02507 Trre-Chr13 22842594 22843124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02507 1 152 C3H Transcription Factor Family AT1G63840 47.097 2.66e-46 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02507 K16281 - gmx:100813224 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02507 13 22842594 22843124 Trre13g02507 13 22842594 22843124 ECH
Trre13g02507 13 22842594 22843124 Trre15g01138 15 8814789 8815307 PCT