Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02504 ATGGTAGAGAGATCAATGGACTTCATTATTCAACTCATAGTCCTCTATGGTGTGGATCCATCTGATGTAAGGCATCAAAGAGGTTGCTTTGAGGAAGCTTTCAGAAAACATCAAGAAATATTTGGTCAACACAATGATAGGGTTCAAAGATGGAGAGATGCTTTGACACAAGTGTCCAGTTACTCTGGATGGGACTCCAAGGGCCAGCATGAGGCATCACTAGTGGAAAACATTGCTCAACACATACATAGAAAGTTGGTACCTAAATTTCCATCTTGTACAGAAAACCTTGTTGGTATTTCTTCAAAGGTAGACCAAGTGAACAAGCTGATAGAAAGTTATGCTATCCCACCTGAACTGTGCAACCATGAGCTTGCTTGTTATTTGTTTTCACGTAATGGTAAGAAGTTGATCAGCACCAGGAGATTACCTCCTATGGATCCATGTTCTCCTCACCTTTATATTCTATACCTGTCCATTGATCAATTTAGCGACGAAATTCTGAAAGATGATTTCTGGAGTGACATTGAATTTGCATTGAAATGTTATTGCTGTAATTCATTGCAAGTAGTGAGGTGTGGTTGGTTGCCGTTTGCACGCAGAAACATGTGTAGCTTGAATGATCGAGCTGACATCATCCACAATGATCAAGGCAATAGAACCACACCTTCTTTTGATGCTTTCGCTGATTCAAAAAGGTTGATTAGTAATGCTGCTAAAAATCAGGCTGCCTCAAACCCAACCAATACTATAGTTGATGCAAAGAGGTTAATTGGAAGGAGATATAGTGATTCCATTATTCAGAACGATATAAAGTTGTGGCCCTTTACGGTCATTTGCTGGTATTAA 849 0.3958 MVERSMDFIIQLIVLYGVDPSDVRHQRGCFEEAFRKHQEIFGQHNDRVQRWRDALTQVSSYSGWDSKGQHEASLVENIAQHIHRKLVPKFPSCTENLVGISSKVDQVNKLIESYAIPPELCNHELACYLFSRNGKKLISTRRLPPMDPCSPHLYILYLSIDQFSDEILKDDFWSDIEFALKCYCCNSLQVVRCGWLPFARRNMCSLNDRADIIHNDQGNRTTPSFDAFADSKRLISNAAKNQAASNPTNTIVDAKRLIGRRYSDSIIQNDIKLWPFTVICWY 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02504 282 Pfam Hsp70 protein 207 278 IPR013126 GO:0005524|GO:0140662
Trre13g02504 282 FunFam heat shock 70 kDa protein-like 202 275 - -
Trre13g02504 282 SUPERFAMILY Actin-like ATPase domain 206 279 IPR043129 -
Trre13g02504 282 Pfam TIR domain 12 99 IPR000157 GO:0007165
Trre13g02504 282 PANTHER HEAT SHOCK PROTEIN 70KDA 210 280 IPR013126 GO:0005524|GO:0140662
Trre13g02504 282 Gene3D - 200 280 - -
Trre13g02504 282 PRINTS 70kDa heat shock protein signature 239 247 - -
Trre13g02504 282 PRINTS 70kDa heat shock protein signature 217 229 - -
Trre13g02504 282 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 64 IPR035897 -
Trre13g02504 282 Gene3D - 3 90 IPR035897 -
Trre13g02504 282 ProSiteProfiles TIR domain profile. 1 86 IPR000157 GO:0007165
Trre13g02504 282 FunFam Heat shock protein ssb1 252 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02504 Trre-Chr13 22816298 22818899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02504 208 278 Calmodulin-binding Proteins AT3G09440 71.831 5.36e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02504 K03283 - adu:107485814 144.821