Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02502 ATGGTCTTCAAAAGAGAGGTAATTTTGTTGGAAAGTGAAATGTATTCATCTTTGATCTTGGTTGGAACTTTTGATGTGTCTCTTCTGACACTTAAGGATGATAGCTTTGAAGTAAAGGCCACTGCTGGCGATACTCACGTAGGAGGAGAGGACTTTGATAACAGAATGGTGAACCACTTTGTTGAAGAGTTAAAGAGGAAGAACAGCGTGGACATTAGTGGGAACCTGAAAGCTTTAAGGAACCTGAGAATGGCTTGTGAGAGGGCAAAGAGGGCACTTTCATTTGACATCGAGGCCACAATTGACATAGATTGTCAGGGTATTGACTTCTTTTCTTCAATTACTCGGGCCAAGTTTGAGCAACTCAACATGGAACTCTTCAAAAAATGCATGCAGATTGTTGGGAGTTGTCTACATGATGCTAACATGGTCAACAGTAGTGTAGATGATATTGTTCTTGTTGGGGGTTCTTCTAGAATTCCCAAAGTGCAGCAGCTATTACAAGACTTTTTCAAGGGGAAGGATTTGTGCATGAGCATGAATCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTGCAGGCTGCTTTGCTGATTGGAGGCATTAAGAATGTTCCAAATTTGGTCTTGCAAGATATTACACCCTTGTCGCTTGGTATATCAACAAAAGGAGATATCATGAGTGTGGTGATTCCTAGGAACACTCCCATTCCTGTCAAAATGACAGAAGAAAGATGCAAGACAAGTGTAGATAAGTTTGGTGTCTCAATTAATGTTTATGAGGGTGAGAGAATAAAAGCCAGTGAGAACAACTTGCTGGGCTTGTTTAGTCTCTTAGTTCCTCGTGCTCCTCGCGGCCTTCGTATCAAAGTAAGCTTTGCTATAGATGCAGATGGTATATTTAATGTCACTGCTGAGGAAGAAATCACTGGAAATAAGAAAGAGATTACAATAACAAATGTAAATGGAAGACTCTCACCTGAAGAAATTAAGGAAATGATCCAAGCAGCTCAGAATTTCAAGGATGAAGATATGAAGTTCCACGAGAAAGCTAGAGCAATGAATGCTTTGGACGATTATCTTTACAAAATGAGTAAAGTGATGCAGGATGATAGTGTTAGTTCCATGCTGGCTCCTGCAGACAAAATGAAGATAAATTCGGCAATTATGAAGGGAAAAAGTTTGATTGATAATCATGCCAACCAGCACAAAGAATCATGTGTGTTTGTTGACTTTATGAAGGAGCTTGAAAGCATCTTTGAATCCACGTTGAACAAGATCAACAAAGGATACTTTACTCTTATGAGGAATGTGGTTTGGAATATTTTAATTTTTTAA 1335 0.3948 MVFKREVILLESEMYSSLILVGTFDVSLLTLKDDSFEVKATAGDTHVGGEDFDNRMVNHFVEELKRKNSVDISGNLKALRNLRMACERAKRALSFDIEATIDIDCQGIDFFSSITRAKFEQLNMELFKKCMQIVGSCLHDANMVNSSVDDIVLVGGSSRIPKVQQLLQDFFKGKDLCMSMNPDEAVAYGAAVQAALLIGGIKNVPNLVLQDITPLSLGISTKGDIMSVVIPRNTPIPVKMTEERCKTSVDKFGVSINVYEGERIKASENNLLGLFSLLVPRAPRGLRIKVSFAIDADGIFNVTAEEEITGNKKEITITNVNGRLSPEEIKEMIQAAQNFKDEDMKFHEKARAMNALDDYLYKMSKVMQDDSVSSMLAPADKMKINSAIMKGKSLIDNHANQHKESCVFVDFMKELESIFESTLNKINKGYFTLMRNVVWNILIF 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02502 444 FunFam Heat shock 70 kDa 48 129 - -
Trre13g02502 444 Gene3D - 178 195 - -
Trre13g02502 444 PANTHER HEAT SHOCK PROTEIN 70KDA 22 387 IPR013126 GO:0005524|GO:0140662
Trre13g02502 444 Gene3D - 354 428 IPR029048 -
Trre13g02502 444 PRINTS 70kDa heat shock protein signature 22 32 - -
Trre13g02502 444 PRINTS 70kDa heat shock protein signature 148 164 - -
Trre13g02502 444 PRINTS 70kDa heat shock protein signature 285 301 - -
Trre13g02502 444 PRINTS 70kDa heat shock protein signature 180 200 - -
Trre13g02502 444 PRINTS 70kDa heat shock protein signature 206 225 - -
Trre13g02502 444 Pfam Hsp70 protein 22 420 IPR013126 GO:0005524|GO:0140662
Trre13g02502 444 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 352 426 IPR029048 -
Trre13g02502 444 ProSitePatterns Heat shock hsp70 proteins family signature 3. 151 165 IPR018181 -
Trre13g02502 444 Gene3D - 22 177 - -
Trre13g02502 444 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 203 357 IPR029047 -
Trre13g02502 444 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 202 353 IPR029047 -
Trre13g02502 444 SUPERFAMILY Actin-like ATPase domain 22 197 IPR043129 -
Trre13g02502 444 Gene3D Actin; Chain A, domain 4 48 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02502 Trre-Chr13 22814704 22816038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02502 22 429 Calmodulin-binding Proteins AT3G12580 57.869 2.89e-158 460