Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02500 ATGGAAGAGAGGGAGGAAAATACAGAACAAGAACCCAACGACGAGGCGGCCAAAGAAGAAGAAGAATGCGACGCCATTGCGGTGGTGGTGGAGATCCAACATGTCATCGAATCGGTTGTTCAATTCGGGGAATACAGAAGAACACAAAGGAAAGAATCACACAATCTTGCTCGTCGTTTCAAACACATGTTACCTCTTATGGAAGACCTTCGTGATCTTCAACAACCTGTTCCTCAAAACGGTGTCGTTTGGTTGAGAAACCTAAGGGATGCACTTTTGTTGGCAAAAGAATTGTTGAAATTGTGCAGCCAAGGAAGCAAAATTCACCTTGCATTGGAGGGGGAGGCGGTTATGATCAAATTTCAGAAGGTTTATGAAAAACTAAGCCAAGCATTTGATGGTGTGCCTTGTGATGAATTGGGGATTTCTGATGAAGTAAAAGAACAGCTTGAGCTAATGCACGTGCAACTCAGGAGGGCGAGGAGAAGAACCGATACACAAGACATAGAACTAGCAATGGATATGATGGTGGTGTTCTCCGATGACCATGATCGTAATGCGGATAGTGCTATTGTTGAAAGGCTTGCAATGAAGTTGGAGCTTCGCAGTGTCGAGGATCTTGAGGTAGAAACAGTGGCTGTTGGAAACCTTGTTAGAGAAAGAAAAGGACAACAAGCTGAGAGTACACAGAAAATAATTAACCTTCTTAACAGATTCAAAAGGGTTGCAGGTATGGAAGAAACCCCTATTGTCCTTGATGGTGATCCTGCCATGCCTAATAAGTTGCTTGGAAGAAGCACTTCTTTGGTCATCCCTCATGAGTTTCTATGTCCAATTACACTTGAAATCATGACTGATCCTGTTATTGTTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAAATCAAATCATAAAACCTGCCCAAAGACAAGACAACCTCTAGAACATCTTCAATTAGCACCAAACTGTGCCTTAAAAAACTTAATTGTTGAATGGTGTGAGAACAACAACTTCAAACTTCCAAAAATCTACAATTCATCGTGTCACGAAGCCTCTCCAACTGAAAACCAAGAAGAAATTCCATCTTTGGTTGAAAGCCTAGGGTCTATCAACTTAGAACATCAGAGAAAGGCGGTCGAAAGAATCCGCATGTTATCAAAAGAAAATCCAGAGAATAGAATTTTAGTCGCCGCGCATGGAGGAATACCGCCATTAGTACAACTACTATCCTATCCAGATTCAAAAATAAAAGAACATGCTGTTACAGCACTTTTGAATCTATCAATTGATGAAGATAACAAGAAACTTATATCGAAAGAAGGCGCTATTCCGGCTATTATAGAAGTTTTGGAAAATGGAAGTGTTGTAGCTAAAGAAAACTCTGCAGCAGCTTTATTTAGCTTATCAATGATTGATGAAAATAAAGAGATTGTAGGAATATCAAATGGGATTCCACCATTGGTAAATTTATTACAATATGGAACAGTTAGAGGTAAAAAAGATGCAGCTACAGCACTTTTTAGCTTATCATTAAACCATGCAAATAAAGATAGAGCTATAAGAGCTGGAATTGTAACACCTTTACTTGAATTGTTAGAGGACACAAACTTGGGAATGATAGATGAAGCACTCTCTATTTTGTTGTTACTTGTGTTGAATCCAGAGGGAAGACAAGAAATTGGACAGTTATCATTTATTGAAATTCTTGTTGGATTTACTAGAGAAGGGACTCCTAAGAATAAGGAATGTGCAGCTTCTGTTCTTCTTGAGTTGTGTGCAAGTAATTCTTCTTTCACTTTGGCAGCACTTCAATTTGGTGTTTATGAGCATTTAATTGAGATGAAACAAAGTGGAACAAATAGAGCACAGAGGAAAGCAAATGCAATTTTAGATCTCATTAGCAAGAGTGAGCAAATTTAA 1935 0.3902 MEEREENTEQEPNDEAAKEEEECDAIAVVVEIQHVIESVVQFGEYRRTQRKESHNLARRFKHMLPLMEDLRDLQQPVPQNGVVWLRNLRDALLLAKELLKLCSQGSKIHLALEGEAVMIKFQKVYEKLSQAFDGVPCDELGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDDHDRNADSAIVERLAMKLELRSVEDLEVETVAVGNLVRERKGQQAESTQKIINLLNRFKRVAGMEETPIVLDGDPAMPNKLLGRSTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFKSNHKTCPKTRQPLEHLQLAPNCALKNLIVEWCENNNFKLPKIYNSSCHEASPTENQEEIPSLVESLGSINLEHQRKAVERIRMLSKENPENRILVAAHGGIPPLVQLLSYPDSKIKEHAVTALLNLSIDEDNKKLISKEGAIPAIIEVLENGSVVAKENSAAALFSLSMIDENKEIVGISNGIPPLVNLLQYGTVRGKKDAATALFSLSLNHANKDRAIRAGIVTPLLELLEDTNLGMIDEALSILLLLVLNPEGRQEIGQLSFIEILVGFTREGTPKNKECAASVLLELCASNSSFTLAALQFGVYEHLIEMKQSGTNRAQRKANAILDLISKSEQI 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02500 644 Pfam U-box domain 271 341 IPR003613 GO:0004842|GO:0016567
Trre13g02500 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 345 IPR013083 -
Trre13g02500 644 MobiDBLite consensus disorder prediction 1 20 - -
Trre13g02500 644 CDD RING-Ubox_PUB 272 324 IPR045210 -
Trre13g02500 644 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Trre13g02500 644 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Trre13g02500 644 PANTHER U BOX DOMAIN-CONTAINING 50 638 - -
Trre13g02500 644 FunFam RING-type E3 ubiquitin transferase 350 644 - -
Trre13g02500 644 Gene3D - 346 643 IPR011989 -
Trre13g02500 644 Pfam Armadillo/beta-catenin-like repeat 394 433 IPR000225 GO:0005515
Trre13g02500 644 Pfam Armadillo/beta-catenin-like repeat 477 515 IPR000225 GO:0005515
Trre13g02500 644 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 405 447 IPR000225 GO:0005515
Trre13g02500 644 SUPERFAMILY ARM repeat 363 639 IPR016024 -
Trre13g02500 644 Gene3D - 23 136 IPR036537 GO:0007166
Trre13g02500 644 Coils Coil 143 163 - -
Trre13g02500 644 SMART arm_5 435 475 IPR000225 GO:0005515
Trre13g02500 644 SMART arm_5 476 516 IPR000225 GO:0005515
Trre13g02500 644 SMART arm_5 558 598 IPR000225 GO:0005515
Trre13g02500 644 SMART arm_5 517 557 IPR000225 GO:0005515
Trre13g02500 644 SMART arm_5 394 434 IPR000225 GO:0005515
Trre13g02500 644 FunFam RING-type E3 ubiquitin transferase 25 138 - -
Trre13g02500 644 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 487 529 IPR000225 GO:0005515
Trre13g02500 644 FunFam RING-type E3 ubiquitin transferase 267 344 - -
Trre13g02500 644 SUPERFAMILY RING/U-box 270 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02500 Trre-Chr13 22785434 22789140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02500 27 644 U-box Gene Family AT5G42340 61.997 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02500 - - psat:127127055 1053.89