Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02499 ATGTTGTCAATGGAAGAGAGGGAGGAAAATACAGAACAAGAACCCAACGACGAGGCGGCCAAAGAAGAAGAAGAATGCGACGCCATTGCGGTGGTGGTGGAGATCCAACATGTCATCGAATCGGTTGTTCAATTCGGGGAATACAGAAGAACACAAAGGAAAGAATCACACAATCTTGCTCGTCGTTTCAAACACATGTTACCTCTTATGGAAGACCTTCGTGATCTTCAACAACCTGTTCCTCAAAACGGTGTCGTTTGGTTGAGAAACCTAAGGGATGCACTTTTGTTGGCAAAAGAATTGTTGAAATTGTGCAGCCAAGGAAGCAAAATTCACCTTGCATTGGAGGGGGAGGCGGTTATGATCAAATTTCAGAAGGTTTATGAAAAACTAAGCCAAGCATTTGATGGTGTGCCTTGTGATGAATTGGGGATTTCTGATGAAGTAAAAGAACAGCTTGAGCTAATGCACGTGCAACTCAGGAGGGCGAGGAGAAGAACCGATACACAAGACATAGAACTAGCAATGGATATGATGGTGGTGTTCTCCGATGACCATGATCGTAATGCGGATAGTGCTATTGTTGAAAGGCTTGCAATGAAGTTGGAGCTTCGCAGTGTCGAGGATCTTGAGGTAGAAACAGTGGCTGTTGGAAACCTTGTTAGAGAAAGAAAAGGACAACAAGCTGAGAGTACACAGAAAATAATTAACCTTCTTAACAGATTCAAAAGGGTTGCAGGTATGGAAGAAACCCCTATTGTCCTTGATGGTGATCCTGCCATGCCTAATAAGTTGCTTGGAAGAAGCACTTCTTTGGTCATCCCTCATGAGTTTCTATGTCCAATTACACTTGAAATCATGACTGATCCTGTTATTGTTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAAATCAAATCATAAAACCTGCCCAAAGACAAGACAACCTCTAGAACATCTTCAATTAGCACCAAACTGTGCCTTAAAAAACTTAATTGTTGAATGGTGTGAGAACAACAACTTCAAACTTCCAAAAATCTACAATTCATCGTGTCACGAAGCCTCTCCAACTGAAAACCAAGAAGAAATTCCATCTTTGGTTGAAAGCCTAGGGTCTATCAACTTAGAACATCAGAGAAAGGCGGTCGAAAGAATCCGCATGTTATCAAAAGAAAATCCAGAGAATAGAATTTTAGTCGCCGCGCATGGAGGAATACCGCCATTAGTACAACTACTATCCTATCCAGATTCAAAAATAAAAGAACATGCTGTTACAGCACTTTTGAATCTATCAATTGATGAAGATAACAAGAAACTTATATCGAAAGAAGGCGCTATTCCGGCTATTATAGAAGTTTTGGAAAATGGAAGTGTTGTAGCTAAAGAAAACTCTGCAGCAGCTTTATTTAGCTTATCAATGATTGATGAAAATAAAGAGATTGTAGGAATATCAAATGGGATTCCACCATTGGTAAATTTATTACAATATGGAACAGTTAGAGGTAAAAAAGATGCAGCTACAGCACTTTTTAGCTTATCATTAAACCATGCAAATAAAGATAGAGCTATAAGAGCTGGAATTGTAACACCTTTACTTGAATTGTTAGAGGACACAAACTTGGGAATGATAGATGAAGCACTCTCTATTTTGTTGTTACTTGTGTTGAATCCAGAGGGAAGACAAGAAATTGGACAGTTATCATTTATTGAAATTCTTGTTGGATTTACTAGAGAAGGGACTCCTAAGAATAAGGAATGTGCAGCTTCTGTTCTTCTTGAGTTGTGTGCAAGTAATTCTTCTTTCACTTTGGCAGCACTTCAATTTGGTGTTTATGAGCATTTAATTGAGATGAAACAAAGTGGAACAAATAGAGCACAGAGGAAAGCAAATGCAATTTTAGATCTCATTAGCAAGAGTGAGCAAATTTAA 1944 0.3899 MLSMEEREENTEQEPNDEAAKEEEECDAIAVVVEIQHVIESVVQFGEYRRTQRKESHNLARRFKHMLPLMEDLRDLQQPVPQNGVVWLRNLRDALLLAKELLKLCSQGSKIHLALEGEAVMIKFQKVYEKLSQAFDGVPCDELGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDDHDRNADSAIVERLAMKLELRSVEDLEVETVAVGNLVRERKGQQAESTQKIINLLNRFKRVAGMEETPIVLDGDPAMPNKLLGRSTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFKSNHKTCPKTRQPLEHLQLAPNCALKNLIVEWCENNNFKLPKIYNSSCHEASPTENQEEIPSLVESLGSINLEHQRKAVERIRMLSKENPENRILVAAHGGIPPLVQLLSYPDSKIKEHAVTALLNLSIDEDNKKLISKEGAIPAIIEVLENGSVVAKENSAAALFSLSMIDENKEIVGISNGIPPLVNLLQYGTVRGKKDAATALFSLSLNHANKDRAIRAGIVTPLLELLEDTNLGMIDEALSILLLLVLNPEGRQEIGQLSFIEILVGFTREGTPKNKECAASVLLELCASNSSFTLAALQFGVYEHLIEMKQSGTNRAQRKANAILDLISKSEQI 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02499 647 Gene3D - 26 139 IPR036537 GO:0007166
Trre13g02499 647 FunFam RING-type E3 ubiquitin transferase 270 347 - -
Trre13g02499 647 SUPERFAMILY ARM repeat 366 642 IPR016024 -
Trre13g02499 647 PANTHER U BOX DOMAIN-CONTAINING 53 641 - -
Trre13g02499 647 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Trre13g02499 647 FunFam RING-type E3 ubiquitin transferase 28 141 - -
Trre13g02499 647 FunFam RING-type E3 ubiquitin transferase 353 647 - -
Trre13g02499 647 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 490 532 IPR000225 GO:0005515
Trre13g02499 647 Gene3D - 349 646 IPR011989 -
Trre13g02499 647 CDD RING-Ubox_PUB 275 327 IPR045210 -
Trre13g02499 647 Pfam U-box domain 274 344 IPR003613 GO:0004842|GO:0016567
Trre13g02499 647 Pfam Armadillo/beta-catenin-like repeat 397 436 IPR000225 GO:0005515
Trre13g02499 647 Pfam Armadillo/beta-catenin-like repeat 480 518 IPR000225 GO:0005515
Trre13g02499 647 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 408 450 IPR000225 GO:0005515
Trre13g02499 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 348 IPR013083 -
Trre13g02499 647 SUPERFAMILY RING/U-box 273 351 - -
Trre13g02499 647 MobiDBLite consensus disorder prediction 1 23 - -
Trre13g02499 647 Coils Coil 146 166 - -
Trre13g02499 647 SMART arm_5 479 519 IPR000225 GO:0005515
Trre13g02499 647 SMART arm_5 397 437 IPR000225 GO:0005515
Trre13g02499 647 SMART arm_5 438 478 IPR000225 GO:0005515
Trre13g02499 647 SMART arm_5 520 560 IPR000225 GO:0005515
Trre13g02499 647 SMART arm_5 561 601 IPR000225 GO:0005515
Trre13g02499 647 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02499 Trre-Chr13 22785434 22789149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02499 30 647 U-box Gene Family AT5G42340 61.997 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02499 - - psat:127127055 1053.89