Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02487 ATGTCTGGTGGCCCTATTCCTCCCGAGATTGGAAAGTTGATCAATTTAATAATTCTATCAATTCAAAAAAGTAACTTGATTGGTTCAATTCCACAAGAAATTGGGTTTTTGACAAACCTTAAATTCATTGATTTGTCAAGAAACTCTCTATCAAAGGAACTAGGACACATGAAATCATTACTTGAACTCAAGATTAGTAACAATCATTTCACAGGTAGCATCCCAGCAGAAATTGATTCACTTCAAAGACTCGAACAGTTGGATCTCGGAGGAAATGAGTTGAATGGAACGATACCGAAACAAGTTGTGGAGCTACCGAGGTTACGGAAGTTTAATTTGAATAAAAACAAAATTGAAGGAAGAAGAATTCCTCAAAACTTTAAAAGGAGTTTGGTTTTTGTTAATATATCAGACAACCAGTTAGAAGGGCCACTTCCAAATATTCCAGCTTTTCTTAATGCTTCATCTGAATCATCATTCAAAAATAACAAAGAGTTATGTGGAAATATCACAGATAAAGAAATGTCATGTTTCAGTTCAAAGTCTTTTATGAGTGAGATTGAAACCTTGACAGGAATCAAACACAGGAACATCATAAAGCTTCATGGATTTTGCTCACATTCTAAGTTCTCATTTTTGGTTTACAAGTTCTTGGAAGGTGGAAGCTTAGATCAATTACTAAACAATGACACACAAGCCACTGCATTTGATTGGAAAAAGAGGGTGAATGTTGTTAAAGGTGTGGCCAATGCTTTGTCCTATTTGCATCATGATTGCTCACCTCCTATTATTCACCGCGATATATCAAGCAAGAATATCCTTCTTAATCTTGACTATGAAGCTCACGTCTCCGACTTCGGGACAGCAAAGTTTCTAAAGCCTGGTTTACTTAGTTGGACCCAATTTGCAGGCACTTTTGGATATGCAGCACCGGAGTTGGCTCAAACAATGGAAGTGAATGAGAAATGTGATGTATACAGCTTTGGAGTACTTGCATTGGAAATCATAACGGGAAAACATCCGGGAGATCTCATTTCATTATTTTTGTCATCATCTACAAGGCCAATGGCTAATGATATGTTGTTGATAGATGTTTTAGATCAACGACCTCAACAAGTTATGAGACCAATAGATAAGGAGGTTATCTTGATTACAAAGTTGGCATTTGCTTGCTTGAGTCAAAATCCACGTTCTCGTCCAACCATGGAACAAGTATCTAAGATGCTTGCAGCAGGAAAATCACCTTTGGGGACTCAACTTCGCGTGATCAGACTAGGACAACTTCAATAA 1290 0.3721 MSGGPIPPEIGKLINLIILSIQKSNLIGSIPQEIGFLTNLKFIDLSRNSLSKELGHMKSLLELKISNNHFTGSIPAEIDSLQRLEQLDLGGNELNGTIPKQVVELPRLRKFNLNKNKIEGRRIPQNFKRSLVFVNISDNQLEGPLPNIPAFLNASSESSFKNNKELCGNITDKEMSCFSSKSFMSEIETLTGIKHRNIIKLHGFCSHSKFSFLVYKFLEGGSLDQLLNNDTQATAFDWKKRVNVVKGVANALSYLHHDCSPPIIHRDISSKNILLNLDYEAHVSDFGTAKFLKPGLLSWTQFAGTFGYAAPELAQTMEVNEKCDVYSFGVLALEIITGKHPGDLISLFLSSSTRPMANDMLLIDVLDQRPQQVMRPIDKEVILITKLAFACLSQNPRSRPTMEQVSKMLAAGKSPLGTQLRVIRLGQLQ 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02487 429 SUPERFAMILY L domain-like 5 151 - -
Trre13g02487 429 ProSitePatterns Tyrosine protein kinases specific active-site signature. 263 275 IPR008266 GO:0004672|GO:0006468
Trre13g02487 429 Pfam Protein kinase domain 176 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02487 429 ProSiteProfiles Protein kinase domain profile. 134 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02487 429 SUPERFAMILY Protein kinase-like (PK-like) 179 409 IPR011009 -
Trre13g02487 429 Gene3D Phosphorylase Kinase; domain 1 174 218 - -
Trre13g02487 429 PANTHER LEUCINE RICH REPEAT KINASE 2 179 415 - -
Trre13g02487 429 Gene3D Ribonuclease Inhibitor 53 173 IPR032675 -
Trre13g02487 429 Gene3D Transferase(Phosphotransferase) domain 1 219 418 - -
Trre13g02487 429 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 51 177 - -
Trre13g02487 429 Gene3D Ribonuclease Inhibitor 2 52 IPR032675 -
Trre13g02487 429 FunFam MDIS1-interacting receptor like kinase 2 218 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02487 Trre-Chr13 22557269 22559089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02487 171 311 Receptor kinase-like Gene Family AT4G08850 60.563 7.48e-52 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre13g02487 Pkinase 1.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02487 - - lja:Lj0g3v0284579.1 398.667