Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02482 ATGTCGATCTTCGACGGAGCTTTCATCAACACACAACTTTCCAAACACACATCGATCTTCGGTCTCCGTTTATGGGTTGTAATCGGAATCTTAATCGGCGTTATAATCGTCTTCATCCTCTTCTTAATCTCCCTTTGTGTAGTTTCTCGCCGGCGCCACCGCCGTACCGGCGATTACAAAATCACCGGAGCTACACCAGCTAAAGAAATCCAAGAGATCGTGCATATTCCAGGACCCCATATGCTCCGTCGACCAGCTCCGGCGAAAGTACCGGAGATCCACGTGGATATCGGAAGACAAGAACACCGTGTGGTTGTTAAGTCAGATAAAGTTTCAAGTGGTGAGAGTAAAGGAACAGTTGGAAGTGGGTGTGAAACGACGTCGTCTTTTGGAAGTGGTAGTGTTGGTGGAATTGGACCTGAAGTATCACATCTTGGATGGGGAAGATGGTATACTTTGAGAGAACTTGAAGATGCTACTGGTGGGTTGTGTCCAGAAAATGTTCTTGGTGAAGGTGGTTATGGAATTGTTTATCATGGTGTTCTCACTGATGGTACTAAAGTTGCTGTCAAAAATCTCTTGAATAACAAGGGCCAAGCTGAAAAAGAATTCAAAGTCGAGGTAGAAGCAATTGGTCGAGTCCGGCACAAAAATCTTGTTAGGTTGCTTGGATATTGTGTTGAAGGGGCCTACAGGATGCTTGTGTATGAATATGTAGACAATGGCAATTTAGAACAGTGGTTGCATGGGGATGTTGGACCTGTAAGCCCTTTGACATGGGAAATACGCATGAACGTTATATTAGGAACAGCAAGAGGATTGGCCTATCTTCACGAAGGTCTTGAACCTAAGGTTGTTCACCGAGATGTAAAATCAAGCAACATCCTCCTCGATCGCCAATGGAACTCCAAGGTTTCTGATTTCGGGCTTGCCAAGCTTTTGAATTCCGAGAATAGTTATGTCACAACTCGAGTAATGGGGACATTTGGTTATGTTGCACCAGAATATGCCTGCACGGGAATGCTTACCGAGAAGAGTGATGTTTATAGCTTTGGGATACTTATCATGGAGATAATTACCGGGAGAAGTCCTGTTGATTATGGTAGACCACAAGGAGAGGTTAATTTAATAGAGTGGTTGAAGACTATGGTTGGTAATCGAAAAGCTGAGGAAGTAGTCGATCCTAAGCTACCTGAGTTGCCATCTTCAAAGGCTCTTAAACGTGCTCTATTAATTGCTCTTCGGTGTGTTGATCCTGATGCAACAAAGAGGCCTAAAATGGGACATGTCATTCACATGCTCGAAGCAGACGACCTGCTATTCCATAATGATCGCAAAACTGAAGGAGAGTCTTCGCGATCCCTTCATGATTTTCAACAAGAGCATGAGGACTCAAATTTGGATAAGAGAACAGAAGAAGGTATCAGTGTTGAAACCGAACATGGTAGTGCTAGAAATAATTATCAGTCTACTAGGGGGAGATGA 1485 0.4384 MSIFDGAFINTQLSKHTSIFGLRLWVVIGILIGVIIVFILFLISLCVVSRRRHRRTGDYKITGATPAKEIQEIVHIPGPHMLRRPAPAKVPEIHVDIGRQEHRVVVKSDKVSSGESKGTVGSGCETTSSFGSGSVGGIGPEVSHLGWGRWYTLRELEDATGGLCPENVLGEGGYGIVYHGVLTDGTKVAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGPVSPLTWEIRMNVILGTARGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLNSENSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYGRPQGEVNLIEWLKTMVGNRKAEEVVDPKLPELPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHNDRKTEGESSRSLHDFQQEHEDSNLDKRTEEGISVETEHGSARNNYQSTRGR 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02482 494 SUPERFAMILY Protein kinase-like (PK-like) 142 435 IPR011009 -
Trre13g02482 494 ProSiteProfiles Protein kinase domain profile. 163 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02482 494 Gene3D Phosphorylase Kinase; domain 1 140 238 - -
Trre13g02482 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Trre13g02482 494 FunFam Probable serine/threonine-protein kinase At1g01540 143 238 - -
Trre13g02482 494 FunFam Putative receptor-like serine/threonine-protein kinase 239 449 - -
Trre13g02482 494 MobiDBLite consensus disorder prediction 480 494 - -
Trre13g02482 494 MobiDBLite consensus disorder prediction 446 479 - -
Trre13g02482 494 ProSitePatterns Protein kinases ATP-binding region signature. 169 191 IPR017441 GO:0005524
Trre13g02482 494 Gene3D Transferase(Phosphotransferase) domain 1 239 451 - -
Trre13g02482 494 MobiDBLite consensus disorder prediction 446 494 - -
Trre13g02482 494 PANTHER OS01G0323000 PROTEIN 8 464 - -
Trre13g02482 494 CDD STKc_IRAK 169 435 - -
Trre13g02482 494 Pfam Protein kinase domain 167 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02482 494 SMART serkin_6 163 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02482 Trre-Chr13 22514994 22518831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02482 132 477 Receptor kinase-like Gene Family AT4G02010 43.137 4.14e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trre13g02482 Pkinase 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02482 - - gmx:100817295 775.007