Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02480 ATGGCCACAACTCCTTCTCTTCTAAGCTCATCTGGCTCTTCTTTTTTGTCTCAATTTCCAACTTTCCCAACCCAATTTTCTTCTTCATTGTTCTCTCATGGAAACCACAAGCATCGAAGTGCAGTGGTGTCCGTGAAAGCCATAGCTTCTGGTGCTGTATTGGTGGAGAAATCTGAAGCAGAGCAGGTTTATAGGCTCAAAACTACCTATAATGAGAAAATTGTTCCTTTGCTCATCGAAGAATTCTCTTACACCAACATTCATCAGGTGCCTAAAGTTAATAAGATTGTGGTAAACTGTGGTATTGGAGAAGCTGCACAAAATGCAAAAGGTTTGGATGCTGCAGTTAATGATCTAGCACTGATCACTGGACAGAGACCTGTTAAAACTCGAGCGAGGAATTCCGTTGCCACCTTTAAGATCAGGGAAGGTCAACCACTTGGTATTGCTGTGACACTCAGAGGAAAAATAATGTACTCATTCTTAGACCGCGTTATCAACTTAGGGCTTCCTAGGACAAGAGATTTTCAAGGTGTGAATATCAGCAGCTTTGATGGGAATGGGAATTTCAACATTGGTATTAAAGACCAAACTGTGTTCCCAGAGCTGAAATCTGGTTTTGGTACACCTAGAGGAATGGATATCTGCATCTCAACAACTGCTAAAACTGATCAAGAAGGACAGAAATTATTGGCTCTCATGGGCATGCCCTTCAGAGAGGGAGTTGAAAATACCCAAATAGTTCGCAAAAAGAAGTTGAAGTCTCATCATTTTGATGCAAAATCAAAGGGTAGAGGAGATAGAGCAAGGAAGTAA 816 0.413 MATTPSLLSSSGSSFLSQFPTFPTQFSSSLFSHGNHKHRSAVVSVKAIASGAVLVEKSEAEQVYRLKTTYNEKIVPLLIEEFSYTNIHQVPKVNKIVVNCGIGEAAQNAKGLDAAVNDLALITGQRPVKTRARNSVATFKIREGQPLGIAVTLRGKIMYSFLDRVINLGLPRTRDFQGVNISSFDGNGNFNIGIKDQTVFPELKSGFGTPRGMDICISTTAKTDQEGQKLLALMGMPFREGVENTQIVRKKKLKSHHFDAKSKGRGDRARK 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02480 271 Pfam ribosomal L5P family C-terminus 146 238 IPR031309 -
Trre13g02480 271 Hamap 50S ribosomal protein L5 [rplE]. 63 240 IPR020930 GO:0003735|GO:0005840|GO:0006412
Trre13g02480 271 FunFam 50S ribosomal protein L5 61 240 - -
Trre13g02480 271 Gene3D - 57 240 IPR022803 -
Trre13g02480 271 Pfam Ribosomal protein L5 86 142 IPR031310 -
Trre13g02480 271 ProSitePatterns Ribosomal protein L5 signature. 119 135 IPR020929 GO:0003735|GO:0005840|GO:0006412
Trre13g02480 271 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 67 244 IPR002132 GO:0003735|GO:0005840|GO:0006412
Trre13g02480 271 SUPERFAMILY RL5-like 65 239 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02480 Trre-Chr13 22496909 22498884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02480 92 195 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 31.776 1.01e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02480 K02931 - gmx:100800193 392.119