Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02455 ATGGAACAAGATTGGGATCTCCATGCTGTGGTTAGAGGTTGCTCCACCGTCACCTCCACCGCAGCTACTTCCTCTGTTTCTTCTACCTCTGTTTTTCCCCTGCATCCTGAATCTTCTAGTGGCTTCTCAACTATCTTTGGTGGTGAACAAAAACCTCAAATTTTGTCTCTTTCTACACACCCTTTTGAAGCTAGAAGCTCCTCCATTGAAGAGTTGCATGAACTTTGCAAACCTTTCTTTTCTAGATCACAACCTATCTCTTTGCAATCTTCTCCTTTGTTTTCCTCATTCTCTTATTCCTCGGCATCACCCAAATTAGCTCAAACACAAGACAAACAACAACAACAACAACAACAACAAAGAAGTAAACAACTACACCAAGGTGGTTCTGTCACCAACCCAAGATCAAAAAGAAGGAAAAATCAACTTAAGAAAGTTTGTCAAGTACCAGTGGAGAGTCTCTCTTCAGACATATGGGCATGGAGGAAATATGGACAAAAACCCATAAAAGGGTCACCATATCCAAGGGGATATTATAGATGTAGCAGTTCAAAAGGGTGTTTAGCAAGAAAACAAGTTGAAAGAAACAGATCAGATCCAACAATGTTCATAGTAACATATACATCTGAACACAATCATCCTGCTCCTACTCATAAAAACTCTCTTGCTGGTTCAACACGCCAGAAACCATTAACACCTCCTCAAGCTGAAACCAACAAAGAACAATCTGAGAAGGAAGAAGAACTTACAAAACCATCTTCTCCTGTTACCTCAGGAGGTGAAGAAGAGGTTCAAACTCAAGGAGAAAAAGAAGATTGTTTTATGGATGATGAAGAAGGAGATGAATTTGGGAGTTTAGATGATGTTGTTTTAACAGATGATTTCTTTGATAGTTTAGATGAACTGAATCAACTTGCAGCTGGTTCTGGAGATTGTTTTGCAGATCCATTTTCTTCAGCCATTGCAATTCCTAATTGGGTGGCCAATAGTGCTACTGCTGCTGCTACAGCTGCAGGTGGTAGCTGA 1026 0.4025 MEQDWDLHAVVRGCSTVTSTAATSSVSSTSVFPLHPESSSGFSTIFGGEQKPQILSLSTHPFEARSSSIEELHELCKPFFSRSQPISLQSSPLFSSFSYSSASPKLAQTQDKQQQQQQQQRSKQLHQGGSVTNPRSKRRKNQLKKVCQVPVESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTSEHNHPAPTHKNSLAGSTRQKPLTPPQAETNKEQSEKEEELTKPSSPVTSGGEEEVQTQGEKEDCFMDDEEGDEFGSLDDVVLTDDFFDSLDELNQLAAGSGDCFADPFSSAIAIPNWVANSATAAATAAGGS 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02455 341 Gene3D WRKY domain 139 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g02455 341 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 305 IPR044810 GO:0003700
Trre13g02455 341 SMART WRKY_cls 155 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02455 341 MobiDBLite consensus disorder prediction 209 238 - -
Trre13g02455 341 MobiDBLite consensus disorder prediction 105 136 - -
Trre13g02455 341 SUPERFAMILY WRKY DNA-binding domain 154 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre13g02455 341 ProSiteProfiles WRKY domain profile. 150 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre13g02455 341 MobiDBLite consensus disorder prediction 105 146 - -
Trre13g02455 341 MobiDBLite consensus disorder prediction 209 269 - -
Trre13g02455 341 FunFam WRKY transcription factor 22 139 209 - -
Trre13g02455 341 Pfam WRKY DNA -binding domain 157 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02455 Trre-Chr13 22022580 22023836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02455 1 340 WRKY Transcription Factor Family AT4G01250 47.059 1.47e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre13g02455 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02455 K13425 - gmx:100798084 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02455 13 22022580 22023836 Trre1g05335 1 59206788 59208069 ECH
Trre13g02455 13 22022580 22023836 Trre13g02455 13 22022580 22023836 ECH
Trre15g01109 15 8587974 8589705 Trre13g02455 13 22022580 22023836 ECH
Trre15g00448 15 3218666 3223109 Trre13g02455 13 22022580 22023836 ECH
Trre13g02455 13 22022580 22023836 Trre15g01109 15 8587974 8589705 PCT