Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02448 ATGTCCTCTCCACACAGTTACTTCACCAACCTTGGCCTTGGCTACTCCATAGCCATAACCCTCGCTTTTCTCGTCCTCCTTGCCACTCTCATCCTCTCCTTTTACCTCTGTTGCCGCAACAACAACCATAATCCCACCAACAATCCAAACAACAATAACTCTCTCAACTACACTGACGGTGGCATTGTTTTGCGACTTGACACATTCATAGCTGAAAACGATGAAGAAAATCAACTTGGAGAAGAAAACACAGTAATGGGTCTAGAAGACAATGTTATAAATTCATATCCAAGGTTTCAGTTTAGCAGAGACAGCGCAACTGTTTTGGGACAGAACACCACGTGTTCTATTTGTTTGTGTGAGTACAAGGATTCTGAAATGCTTAGGATGATGCCTGAATGTCGTCATTACTTTCATCTCTGTTGTCTTGATTCGTGGTTGAAGCTTAATGGGTCTTGTCCTGTTTGTCGAAACTCCCCGCTTCCAACGCCGCTTTCTACTCCGCTTCAAGAGGTTGTTCCGCTTTCTCAGTATGGTGATGATCGGAGACGAAGGAGGTGA 561 0.4439 MSSPHSYFTNLGLGYSIAITLAFLVLLATLILSFYLCCRNNNHNPTNNPNNNNSLNYTDGGIVLRLDTFIAENDEENQLGEENTVMGLEDNVINSYPRFQFSRDSATVLGQNTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYGDDRRRRR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02448 186 SMART ring_2 115 156 IPR001841 -
Trre13g02448 186 SUPERFAMILY RING/U-box 114 162 - -
Trre13g02448 186 Pfam Ring finger domain 114 157 IPR001841 -
Trre13g02448 186 PANTHER RING-H2 FINGER PROTEIN ATL67 5 185 IPR044289 GO:0016567|GO:0016740
Trre13g02448 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 161 IPR013083 -
Trre13g02448 186 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02448 Trre-Chr13 21952040 21952600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02448 12 177 C3H Transcription Factor Family AT5G06490 37.209 1.96e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02448 - - lja:Lj1g3v2807930.1 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02448 13 21952040 21952600 Trre13g02448 13 21952040 21952600 ECH
Trre13g02448 13 21952040 21952600 Trre15g01099 15 8532295 8532870 PCT