Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02439 ATGATTCATGCAGACACATACATTGTTGGTGATAGCCAAGGTTGGACCTATGGTGTTTCAAATTGGCCCTTAGGAAAAACTTTCTATGAAGGTGACACACTCGTATTCAGTTACGTTCCTTTAATACATAACGTGGTAATAGTGAATGAAGTTGGATTCAATTATTGTTCAACTCTGGGAGCATCTGGATTATATGCCTCTGGATCAGATAGAATTACACTTGCTAAGGGAGCTAACTACTTCATTTCTGGTTTTCCAGATCAATGCTTACTTGGAATGAAAATTGCAATCAATGCTATAATTAAGCTCTTAATTAATGTATAA 324 0.358 MIHADTYIVGDSQGWTYGVSNWPLGKTFYEGDTLVFSYVPLIHNVVIVNEVGFNYCSTLGASGLYASGSDRITLAKGANYFISGFPDQCLLGMKIAINAIIKLLINV 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02439 107 Gene3D - 5 100 IPR008972 -
Trre13g02439 107 ProSiteProfiles Phytocyanin domain profile. 5 101 IPR003245 GO:0009055
Trre13g02439 107 CDD Plantacyanin 6 99 IPR041844 -
Trre13g02439 107 PANTHER BLUE COPPER PROTEIN 6 98 IPR039391 GO:0009055
Trre13g02439 107 Pfam Plastocyanin-like domain 19 93 IPR003245 GO:0009055
Trre13g02439 107 SUPERFAMILY Cupredoxins 6 99 IPR008972 -
Trre13g02439 107 FunFam basic blue protein-like 5 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02439 Trre-Chr13 21863509 21863940 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02439 6 100 Phytocyanin Superfamily AT1G17800 41.837 1.98e-19 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02439 - - psat:127106281 116.701