Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02433 ATGGGTGAAGGAAGAAGCAATAGCGCAAGTATTATTTTAATACTAGTATTATGTATGTTGGTGTTTCATTTTAACATGATTCATGCAGACACATACATTGTTGGTGATAGCCAAGGTTGGACCTATGGTGTTTCAAATTGGCCCTTAGGAAAAACTTTCTATGAAGGTGACACACTCGTGTTCAGTTACGTTCCTTTAATACATAACGTGGTAATAGTGAATGAAATTGGATTCAATTATTGTTCAACTCTAGGAGCATCTGGATTATATGCCTCTGGATCGGATAGAATTACACTTGCTAAGGGAGCTAACTACTTCATATCGGGTTTTCCAGATCAATGCTTACTTGGAATGAAAATTGCAGTCAATGCTAATTAA 378 0.3624 MGEGRSNSASIILILVLCMLVFHFNMIHADTYIVGDSQGWTYGVSNWPLGKTFYEGDTLVFSYVPLIHNVVIVNEIGFNYCSTLGASGLYASGSDRITLAKGANYFISGFPDQCLLGMKIAVNAN 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02433 125 Gene3D - 30 124 IPR008972 -
Trre13g02433 125 PANTHER BLUE COPPER PROTEIN 24 123 IPR039391 GO:0009055
Trre13g02433 125 ProSiteProfiles Phytocyanin domain profile. 30 125 IPR003245 GO:0009055
Trre13g02433 125 Pfam Plastocyanin-like domain 44 118 IPR003245 GO:0009055
Trre13g02433 125 SUPERFAMILY Cupredoxins 31 124 IPR008972 -
Trre13g02433 125 FunFam basic blue protein-like 30 124 - -
Trre13g02433 125 CDD Plantacyanin 31 124 IPR041844 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02433 Trre-Chr13 21785993 21786478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02433 12 124 Phytocyanin Superfamily AT1G17800 38.333 1.41e-19 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02433 - - psat:127106281 149.828