Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02426 ATGGAGTTTCTTTACCTTTACATTCTCTCTACAACAATTCTTCTATTAAGTATATTTCCTCAGTCAAAACCATCTTATGACAACCCTATAAGTATTGCATACCTTCTTGGTTCTGAAGCATCCAACATAGCCTCAATCAACAACATCTCAACAGATACCAAGGTTCCTTCCAATAAAACAATTATTGTACCTATCTTGTGTTCATGTTCTGGAAATATCTACCAACATGACACTCCTTACACTGCCAAAAAAGGCGATACTTATTATCACTTGGTAAATGAAACTTACCAAAGCCTCACAACATGTCAGGCTTTGAAGGGTCAAAATTACTATGCCTCTGAAAACATTACAATTGGTGCTGAGCTAACAGTTACAGTGCTATGTGCTTGTCCTACAACAGAACAGACGGCGAAAGGGATCACATCCTTGCTGGTATACACGGTGAACTATGGTGAGACTGTTAAGTCTATAGGAAAGGCTTATGGTGTTGATGAAGAAAGCATACTAGAAGCAAATGAGTTGCAAGTGGCACAAAGTGAAAACAGCAGTGCGATTCTCTATGCATTGACCCCTATATTGCTTCCTCTTAGAGGAAAAAGTTGCAAAGAGGATCCTAATAGTTTCTATTGTACATGTTCTAAGGGAACGGTTGCAGATGGAAGCTGTGATGAATCTGATGATCAAAAGTTTCCTGCAAAATTGGTTGCTGCATTAGGGGTTGGCATTGGTGCAGGCTTTCTGATTTTGTTTCTTTTGGGTTACAAGTTATATCAATATATAAAGAAAATGAGAGCAGATATTCGTAAGGAAAATCTATTCAGACAAAACGGAGGCTACTTGTTACAAGAGAAGTTATCGTCTTATGGAAATGGCGAAATGGCAAAGCTTTTTACAGCTGAGGAGATGCAAAGATCAACAGATAACTATAACCAGAGTAGGTTTCTTGGCCAAGGTGGTTATGGCACGGTGTACAAAGGAATGTTACAGGATGGAACCATAGTTGCAGTACAAAAGTCAAAACAGCTTGACAGAAACCAAATAGAAACTTTCGTCAATGAAGTTGTCACCTTATCACAGATCAACCACAGGAACATTGTCAAACTAATAGGTTGTTGTCTTGAGACAGAAACTCCATTACTTGTCTATGAATATATCCCCAATGAAACACTTTTTCAACATATCCATAGGAAAGATCATGACTCAACCCTTTCATGGGAAAGTCGCCTTAGAATTGCATGTGAGGTAGCCGGAGCAGTGGCATATATGCATTTTTCAGCTTCAATTCCAATTTTTCACCGAGATATAAAACCAAAGCTTATAACCGGGAGAACGCCGATAACATTTAACGATGAAGATGAAGGCCAGAATATGACTGCAAATTTCATTTCGGTGATGAAGGACAATCAACTTTCTACAATTTTAGATGACACGGTGATTAAGGAAGCAAGGAAAGAGGACATTCTTGCTATTGCAAATCTTGCAGTAAGATGTTTGAGACTTGATGGTAAGAAAAGGCAAACAATGAAGGAGGTTTCAGCAGAGTTGGAAGCACTGAGAAAGGTACAAAATTCCTTACATATCAAAGATGATCAAGAGTCACCGAGTGATGAACAATCATCTCAGCATTCAAGTAATGGTATATTTCATGAGTCCACAGTGGAAAGCTTTTCGCTGTCCTCGCAAATGGAATCCACATCCTTCTAA 1704 0.3867 MEFLYLYILSTTILLLSIFPQSKPSYDNPISIAYLLGSEASNIASINNISTDTKVPSNKTIIVPILCSCSGNIYQHDTPYTAKKGDTYYHLVNETYQSLTTCQALKGQNYYASENITIGAELTVTVLCACPTTEQTAKGITSLLVYTVNYGETVKSIGKAYGVDEESILEANELQVAQSENSSAILYALTPILLPLRGKSCKEDPNSFYCTCSKGTVADGSCDESDDQKFPAKLVAALGVGIGAGFLILFLLGYKLYQYIKKMRADIRKENLFRQNGGYLLQEKLSSYGNGEMAKLFTAEEMQRSTDNYNQSRFLGQGGYGTVYKGMLQDGTIVAVQKSKQLDRNQIETFVNEVVTLSQINHRNIVKLIGCCLETETPLLVYEYIPNETLFQHIHRKDHDSTLSWESRLRIACEVAGAVAYMHFSASIPIFHRDIKPKLITGRTPITFNDEDEGQNMTANFISVMKDNQLSTILDDTVIKEARKEDILAIANLAVRCLRLDGKKRQTMKEVSAELEALRKVQNSLHIKDDQESPSDEQSSQHSSNGIFHESTVESFSLSSQMESTSF 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02426 567 MobiDBLite consensus disorder prediction 527 567 - -
Trre13g02426 567 SMART LysM_2 145 195 IPR018392 -
Trre13g02426 567 SMART LysM_2 79 125 IPR018392 -
Trre13g02426 567 Gene3D LysM domain 130 204 IPR036779 -
Trre13g02426 567 Gene3D Phosphorylase Kinase; domain 1 291 384 - -
Trre13g02426 567 Gene3D Transferase(Phosphotransferase) domain 1 440 542 - -
Trre13g02426 567 SUPERFAMILY Protein kinase-like (PK-like) 292 515 IPR011009 -
Trre13g02426 567 CDD LysM 145 174 IPR018392 -
Trre13g02426 567 FunFam Wall-associated receptor kinase 2 280 384 - -
Trre13g02426 567 MobiDBLite consensus disorder prediction 537 567 - -
Trre13g02426 567 Pfam LysM domain 146 175 IPR018392 -
Trre13g02426 567 Pfam Protein kinase domain 309 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02426 567 ProSiteProfiles Protein kinase domain profile. 309 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02426 567 Gene3D Transferase(Phosphotransferase) domain 1 385 439 - -
Trre13g02426 567 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 439 529 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02426 Trre-Chr13 21742142 21744599 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02426 231 436 Receptor kinase-like Gene Family AT1G16120 55.556 1.23e-74 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre13g02426 Pkinase 2.2e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02426 - - vun:114186184 689.108