Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02425 ATGGATAACCAAGATGATTCAACAAAAGAAATGACATGGTCAAAACCATCTTATGACAACCCTATAAGTATTGCATACCTTCTTGGTTCTGAAGCATCCAACATAGCCTCAATCAACAACATCTCAACAGATACCAAGGTTCCTTCCAATAAAACAATTATTGTACCTATCTTGTGTTCATGTTCTGGAAATATCTACCAACATGACACTCCTTACACTGCCAAAAAAGGCGATACTTATTATCACTTGGTAAATGAAACTTACCAAAGCCTCACAACATGTCAGGCTTTGAAGGGTCAAAATTACTATGCCTCTGAAAACATTACAATTGGTGCTGAGCTAACAGTTACAGTGCTATGTGCTTGTCCTACAACAGAACAGACGGCGAAAGGGATCACATCCTTGCTGGTATACACGGTGAACTATGGTGAGACTGTTAAGTCTATAGGAAAGGCTTATGGTGTTGATGAAGAAAGCATACTAGAAGCAAATGAGTTGCAAGTGGCACAAAGTGAAAACAGCAGTGCGATTCTCTATGCATTGACCCCTATATTGCTTCCTCTTAGAGGAAAAAGTTGCAAAGAGGATCCTAATAGTTTCTATTGTACATGTTCTAAGGGAACGGTTGCAGATGGAAGCTGTGATGAATCTGATGATCAAAAGTTTCCTGCAAAATTGGTTGCTGCATTAGGGGTTGGCATTGGTGCAGGCTTTCTGATTTTGTTTCTTTTGGGTTACAAGTTATATCAATATATAAAGAAAATGAGAGCAGATATTCGTAAGGAAAATCTATTCAGACAAAACGGAGGCTACTTGTTACAAGAGAAGTTATCGTCTTATGGAAATGGCGAAATGGCAAAGCTTTTTACAGCTGAGGAGATGCAAAGATCAACAGATAACTATAACCAGAGTAGGTTTCTTGGCCAAGGTGGTTATGGCACGGTGTACAAAGGAATGTTACAGGATGGAACCATAGTTGCAGTACAAAAGTCAAAACAGCTTGACAGAAACCAAATAGAAACTTTCGTCAATGAAGTTGTCACCTTATCACAGATCAACCACAGGAACATTGTCAAACTAATAGGTTGTTGTCTTGAGACAGAAACTCCATTACTTGTCTATGAATATATCCCCAATGAAACACTTTTTCAACATATCCATAGGAAAGATCATGACTCAACCCTTTCATGGGAAAGTCGCCTTAGAATTGCATGTGAGGTAGCCGGAGCAGTGGCATATATGCATTTTTCAGCTTCAATTCCAATTTTTCACCGAGATATAAAACCAAAGCTTATAACCGGGAGAACGCCGATAACATTTAACGATGAAGATGAAGGCCAGAATATGACTGCAAATTTCATTTCGGTGATGAAGGACAATCAACTTTCTACAATTTTAGATGACACGGTGATTAAGGAAGCAAGGAAAGAGGACATTCTTGCTATTGCAAATCTTGCAGTAAGATGTTTGAGACTTGATGGTAAGAAAAGGCAAACAATGAAGGAGGTTTCAGCAGAGTTGGAAGCACTGAGAAAGGTACAAAATTCCTTACATATCAAAGATGATCAAGAGTCACCGAGTGATGAACAATCATCTCAGCATTCAAGTAATGGTATATTTCATGAGTCCACAGTGGAAAGCTTTTCGCTGTCCTCGCAAATGGAATCCACATCCTTCTAA 1680 0.3887 MDNQDDSTKEMTWSKPSYDNPISIAYLLGSEASNIASINNISTDTKVPSNKTIIVPILCSCSGNIYQHDTPYTAKKGDTYYHLVNETYQSLTTCQALKGQNYYASENITIGAELTVTVLCACPTTEQTAKGITSLLVYTVNYGETVKSIGKAYGVDEESILEANELQVAQSENSSAILYALTPILLPLRGKSCKEDPNSFYCTCSKGTVADGSCDESDDQKFPAKLVAALGVGIGAGFLILFLLGYKLYQYIKKMRADIRKENLFRQNGGYLLQEKLSSYGNGEMAKLFTAEEMQRSTDNYNQSRFLGQGGYGTVYKGMLQDGTIVAVQKSKQLDRNQIETFVNEVVTLSQINHRNIVKLIGCCLETETPLLVYEYIPNETLFQHIHRKDHDSTLSWESRLRIACEVAGAVAYMHFSASIPIFHRDIKPKLITGRTPITFNDEDEGQNMTANFISVMKDNQLSTILDDTVIKEARKEDILAIANLAVRCLRLDGKKRQTMKEVSAELEALRKVQNSLHIKDDQESPSDEQSSQHSSNGIFHESTVESFSLSSQMESTSF 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02425 559 MobiDBLite consensus disorder prediction 519 559 - -
Trre13g02425 559 Gene3D Phosphorylase Kinase; domain 1 283 376 - -
Trre13g02425 559 Gene3D Transferase(Phosphotransferase) domain 1 432 534 - -
Trre13g02425 559 Gene3D LysM domain 122 196 IPR036779 -
Trre13g02425 559 CDD LysM 137 166 IPR018392 -
Trre13g02425 559 SMART LysM_2 137 187 IPR018392 -
Trre13g02425 559 SMART LysM_2 71 117 IPR018392 -
Trre13g02425 559 ProSiteProfiles Protein kinase domain profile. 301 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02425 559 Pfam Protein kinase domain 301 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre13g02425 559 MobiDBLite consensus disorder prediction 529 559 - -
Trre13g02425 559 SUPERFAMILY Protein kinase-like (PK-like) 284 507 IPR011009 -
Trre13g02425 559 FunFam Wall-associated receptor kinase 2 272 376 - -
Trre13g02425 559 Pfam LysM domain 138 167 IPR018392 -
Trre13g02425 559 Gene3D Transferase(Phosphotransferase) domain 1 377 431 - -
Trre13g02425 559 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 431 521 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02425 Trre-Chr13 21742142 21745038 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02425 223 428 Receptor kinase-like Gene Family AT1G16120 55.556 7.93e-75 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Trre13g02425 Pkinase 2.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02425 - - vun:114186184 688.723