Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02424 ATGAATATGGTAAAATTGAGTGACTATGATGATGAGCTCTATGAATTCTACCATCATGAAGAGTGTCAAATTACCACTTATTCATATGGTTGCAACTTAGATTCTGAAACCAGAAAGAAAGTGATTGATTGGTTAATAAAAATACACTATGAACAGAAACTCATGCCAGAGACTCTTTACCTCTGTGTCAACATATTTGATCGTTTTCTTTCCAAATCCAATTCTGAAGTCACAACAATAGAAAAACTCAAGCTTCTTGGTTTGGCCTCAATGTTGTTAGCTTCCAAGTATGAACAAAGATACGCCGTAGGAGTTTATGACATTGAATACTTGGCTGAATATTCTTATTTTCCTGAAGAAATATGTGTAATGGAAAAACATATACTGCAACAACTTGATTGGAATTTAACAGTTCCAACACCTTATGTTTTTCTTATTAGAAACATACGGGCGAGTCTTGTATCCGATGAAGATAAGATCATGGAGAATATGGCGTGTTTCTTTTCTGAACTCAGTTTGACACAGTATTCTATCATGTGTGATTATAAGCCTTCTACAGTTGCCGCTTCTGCAGTTTATTGTGCGAGAATTATTGTCGGAAGATACCCTTTTTGGAGCAACGAATTGGAGATGTGTACAGGGTATTCTCAAGAGAAGTTATTGTGTTGTGTCAAGGTTATGATGGAACTGTGTTACCAAACTTGTAGAGAAGGAAACATGGAAGTTTTTAAGAAGTTTTCAAGTTTACGTCAATTTAGGGTTTCGTGTGTTGTTCAAGAAGTTCTCGAACAAGCTTTCTTATTTTAG 807 0.3532 MNMVKLSDYDDELYEFYHHEECQITTYSYGCNLDSETRKKVIDWLIKIHYEQKLMPETLYLCVNIFDRFLSKSNSEVTTIEKLKLLGLASMLLASKYEQRYAVGVYDIEYLAEYSYFPEEICVMEKHILQQLDWNLTVPTPYVFLIRNIRASLVSDEDKIMENMACFFSELSLTQYSIMCDYKPSTVAASAVYCARIIVGRYPFWSNELEMCTGYSQEKLLCCVKVMMELCYQTCREGNMEVFKKFSSLRQFRVSCVVQEVLEQAFLF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02424 268 SMART cyclin_7 43 130 IPR013763 -
Trre13g02424 268 SMART cyclin_7 143 229 IPR013763 -
Trre13g02424 268 Pfam Cyclin, N-terminal domain 13 137 IPR006671 -
Trre13g02424 268 SMART Cyclin_C_2 139 260 IPR004367 -
Trre13g02424 268 Gene3D - 27 130 - -
Trre13g02424 268 PANTHER CYCLINS 7 232 IPR039361 -
Trre13g02424 268 Gene3D - 131 266 - -
Trre13g02424 268 Pfam Cyclin, C-terminal domain 139 257 IPR004367 -
Trre13g02424 268 PIRSF Cyclin_A_B_D_E 1 266 IPR046965 GO:0016538|GO:0044772
Trre13g02424 268 SUPERFAMILY Cyclin-like 138 258 IPR036915 -
Trre13g02424 268 FunFam G2/mitotic-specific cyclin 24 137 - -
Trre13g02424 268 SUPERFAMILY Cyclin-like 5 136 IPR036915 -
Trre13g02424 268 ProSitePatterns Cyclins signature. 38 69 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02424 Trre-Chr13 21735759 21736565 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02424 2 257 Core Cell Cycle Gene Families AT2G26760 38.235 5.24e-55 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02424 K21777 - twl:119990905 199.134