Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02421 ATGAATATGATTTTTTATTCAAGTGTTGATCATACTAATCAACTCATTCAGAATGGATTAGAAAACTTGAGTGACTATGATGACGAGCTCTACAAATTCTACCATCATGAAGAGTCTCAAGTTACCTCTGATTCATATGGTTACAACTTAGATTCTGAAACGAGAAAGAAAGTGGTTGATTGGTTAATAAAAATACACTATGAACAAAAACTCATGCCAGAGACTCTTTACCTCTGTGTCAACATATTTGATCGTTTTCTTTCCAAATCCAATTCTGAAGTCACAACAATAGAAAAACTCAAGCTTCTTGGTCTGGCCTCAATGTTGTTAGCTTCCAAGTACGAACAAAGATACGCCGTCGGAGTTTATGACATTGAATACTTGGCTGAATATTCTTATTTTCCTAAAGAAATATGTGAAATGGAAAAACATATATTGCAACAACTTGATTGGAATTTAACAATTCCAACACCTTATGTTTTTCTTGTTAGAAACATACGGGCGAGCCTTGTATCCGATGAAGATAAGATCATGGAGAATATGGCGTGTTTCTTTTCTGAACTCAGTTTGACACAGTATTCTATCATGTGTGATTATAAGCCTTCCACGATTGCCGCTTCTGCAGTTTATTGTGCGAGAATTATTGTCGGAAGATACCCTTTTTGGAGCAACGAATTGAAGATGTGTACAGGGTATTCTCAAGAGAAGTTATTGTGTTGTGTCAAGGTTATGATGGAACTGTGTTACCAAACTTGTAGAGAAGGAAACATGGAAGTTTTTAATAAGTTTTCAAGTTTACGTCAATTTAGGGTTTCGTGTGTTGTTCAGGAAGTCCTTGAACAAGCTTTCTTATTTTAG 858 0.3531 MNMIFYSSVDHTNQLIQNGLENLSDYDDELYKFYHHEESQVTSDSYGYNLDSETRKKVVDWLIKIHYEQKLMPETLYLCVNIFDRFLSKSNSEVTTIEKLKLLGLASMLLASKYEQRYAVGVYDIEYLAEYSYFPKEICEMEKHILQQLDWNLTIPTPYVFLVRNIRASLVSDEDKIMENMACFFSELSLTQYSIMCDYKPSTIAASAVYCARIIVGRYPFWSNELKMCTGYSQEKLLCCVKVMMELCYQTCREGNMEVFNKFSSLRQFRVSCVVQEVLEQAFLF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02421 285 Pfam Cyclin, C-terminal domain 156 274 IPR004367 -
Trre13g02421 285 Gene3D - 148 283 - -
Trre13g02421 285 Pfam Cyclin, N-terminal domain 31 154 IPR006671 -
Trre13g02421 285 SUPERFAMILY Cyclin-like 23 153 IPR036915 -
Trre13g02421 285 PIRSF Cyclin_A_B_D_E 9 283 IPR046965 GO:0016538|GO:0044772
Trre13g02421 285 SMART Cyclin_C_2 156 277 IPR004367 -
Trre13g02421 285 Gene3D - 43 147 - -
Trre13g02421 285 PANTHER CYCLINS 24 249 IPR039361 -
Trre13g02421 285 FunFam G2/mitotic-specific cyclin 40 154 - -
Trre13g02421 285 ProSitePatterns Cyclins signature. 55 86 IPR006671 -
Trre13g02421 285 SMART cyclin_7 60 147 IPR013763 -
Trre13g02421 285 SMART cyclin_7 160 246 IPR013763 -
Trre13g02421 285 SUPERFAMILY Cyclin-like 155 275 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02421 Trre-Chr13 21730998 21731855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02421 3 274 Core Cell Cycle Gene Families AT2G26760 37.500 7.15e-56 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02421 K21777 - twl:119990905 197.593