Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02417 ATGAAAGAGCTTGAGCAAAATAATTCCAACATTGCCAAGATGCTTATAGAGAAGGTGAAAGGTAACTATAAATCGGTGGTGACTGACGAAAACTTCATAACCGATTCGCTTCCTCATGAAACAATCAATAACCTTAACAAAACAGCGAAATTGATGGTGGATGCTGGTTTTGAGAAAGTGTGTTTTGAGGTTTACAACGGCTACCGTAAGGAATGGTTGGAAGATTTGTTAATAAATAAATTATTAAGATTAGGAAAGATGGGATTTCAAGATTACGTGATTGGAAGATGGATTGAAACTTCAGAGGTTGCTCTCAGAATACTATTTCCCAGTGAGCGACTACTCTACAATTGTGTCTTCTCGAATTCAATGTCTGCATCATCTGATGTCTATTTCTCAGAGCTTTGTCGTGGATCGATCATTGAACTACTGAATTTTGCTGATTCATTTGCAAATGGAAGTCCTTCGGCATGGCGTTTGTTTAAAATCCTTGACTTGTTTGAGACTTTGTGTGATCTAATTCCTGAATTTGAATCATTGTTTCTTGATGATTCGTTGGTGAATGAAGCAATAGAAATAAAGAATAGATTGGGTGAAATAAGTAGAGACATTTTCGTGGAATTTGGGAATATGATATTCCTTACATCGGATGCGGAATTTGATTGTTGGGCTGATGGTGGCGTTCATCCAATGACCTGCGCAGCCACTGGCTACATCGTTATGGCTTTCTGGTCAAGACAAACCCTAGAGCAATTTATTATACCACAATATCCTTCGGTTGATGCTGATAGAGCGGGGACATCTTTATTCTATTCGCAGATGGTGTTGATAATGGAGCAGTTTGAGAGCAAATTGGAAGCTAAGTCACAAATTTACGAGGACCCTGCATTGCGCTATCTTTTCATGATGAATAATCTAGAACACGTTACATGCAGATTGGAAACCTTTTGGGATTATAGGTTCTGTAAAAACGTTAATCAGTACTTTGAACTCTATTGTAGAAGCTCTTGGAATAAGGTGATAGATATTTTGAAGATGGATATGAATGAGTCGGTGGCGCCCAATTCTGAAACAAATTCAATGATAGACAAGCTCAGTCTGTTCAATCAGAAGTTTAGGGAGATGTGTGGAATTCAATCTACATGGCAGATTGATCTTCGATTTGAATCTAGGCTTGAGGTGCGGATATAA 1191 0.382 MKELEQNNSNIAKMLIEKVKGNYKSVVTDENFITDSLPHETINNLNKTAKLMVDAGFEKVCFEVYNGYRKEWLEDLLINKLLRLGKMGFQDYVIGRWIETSEVALRILFPSERLLYNCVFSNSMSASSDVYFSELCRGSIIELLNFADSFANGSPSAWRLFKILDLFETLCDLIPEFESLFLDDSLVNEAIEIKNRLGEISRDIFVEFGNMIFLTSDAEFDCWADGGVHPMTCAATGYIVMAFWSRQTLEQFIIPQYPSVDADRAGTSLFYSQMVLIMEQFESKLEAKSQIYEDPALRYLFMMNNLEHVTCRLETFWDYRFCKNVNQYFELYCRSSWNKVIDILKMDMNESVAPNSETNSMIDKLSLFNQKFREMCGIQSTWQIDLRFESRLEVRI 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02417 396 Gene3D Exocyst complex component Exo70 1 395 - -
Trre13g02417 396 PANTHER EXOCYST COMPLEX PROTEIN EXO70 32 385 IPR004140 GO:0000145|GO:0006887
Trre13g02417 396 Pfam Exo70 exocyst complex subunit 96 386 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trre13g02417 396 SUPERFAMILY Cullin repeat-like 17 384 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02417 Trre-Chr13 21695013 21696650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02417 27 384 EXO70 exocyst subunit family AT5G58430 43.947 2.57e-84 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02417 K07195 - tpra:123922483 581.637