Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02411 ATGAATGAGTTTCAAGTTACCTCTAATTCATATGGTTACAACTTAGATTCTGAAATGAGAAAGAAAGTGATTGATTGGTTAATCAAAATACACTATGAACAAAAACTCATGCCACAGACTTTTTACCTTTGTGTCAACATATTTGATCGTTTTCTTTCCAAATCCAATTCTGAAGTCACAACAATAGAAAAACTCAAGCTTCTTGGTCTGGCCTCAATGTTGTTAGCTTCCAAGTATGAACAAAGAAGCGCCGTCGGAGTTTATGACATTGAATACTTGGCTGAATATTCTTATTTTCCAAAGGAAATATGTGAAATGGAAAAACATATATTGCAACAACTTGATTGGAATTTAACAATTCCAACACCTTATATTTTTCTTGTTAGAAACATAAGGGCGAGCCTTGTATCCGATGAAGATAAGATCATGGAGAATATGGCGTGTTTCTTTTCTGAACTCAGTTTGACACAGTATTCTATCATGTGTGATTATAAGCCTTCCACGATTGCCGCTTCTGCAGTTTATTGTGCGAGAATTATTGTCGGAAGATACCCTTTTTGGAGCAACGAATTGAAGATGTGTACAGGGTATTCTCAAGAGAAGTTATTATGTTGTGTCAAGGTTATGATGGAACTGTGTTACCAAACTTGTAGAGAAGGAAACATGGAAGTTTTTAAGAAGTTTTCAAGTTTACGTCAATTTAGGGTTTCGTGTGTTGTTCAGGAAGTCCTCGAACAAGCTTTCTTATTTTAG 753 0.3519 MNEFQVTSNSYGYNLDSEMRKKVIDWLIKIHYEQKLMPQTFYLCVNIFDRFLSKSNSEVTTIEKLKLLGLASMLLASKYEQRSAVGVYDIEYLAEYSYFPKEICEMEKHILQQLDWNLTIPTPYIFLVRNIRASLVSDEDKIMENMACFFSELSLTQYSIMCDYKPSTIAASAVYCARIIVGRYPFWSNELKMCTGYSQEKLLCCVKVMMELCYQTCREGNMEVFKKFSSLRQFRVSCVVQEVLEQAFLF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02411 250 SUPERFAMILY Cyclin-like 11 118 IPR036915 -
Trre13g02411 250 Gene3D - 113 248 - -
Trre13g02411 250 PANTHER CYCLINS 18 214 IPR039361 -
Trre13g02411 250 ProSitePatterns Cyclins signature. 20 51 IPR006671 -
Trre13g02411 250 Gene3D - 8 112 - -
Trre13g02411 250 SMART cyclin_7 125 211 IPR013763 -
Trre13g02411 250 SMART cyclin_7 25 112 IPR013763 -
Trre13g02411 250 Pfam Cyclin, C-terminal domain 121 239 IPR004367 -
Trre13g02411 250 FunFam G2/mitotic-specific cyclin 6 119 - -
Trre13g02411 250 SUPERFAMILY Cyclin-like 120 240 IPR036915 -
Trre13g02411 250 PIRSF Cyclin_A_B_D_E 2 248 IPR046965 GO:0016538|GO:0044772
Trre13g02411 250 SMART Cyclin_C_2 121 242 IPR004367 -
Trre13g02411 250 Pfam Cyclin, N-terminal domain 14 119 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02411 Trre-Chr13 21661745 21662497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02411 15 239 Core Cell Cycle Gene Families AT2G26760 39.916 7.77e-54 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02411 K21777 - twl:119990905 186.037