Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02399 ATGGTTTCTCTCTCAACCAACCCTTTCTTTACCCTCACTGCACAAAAAACCTCACCTTCTACTAGATTTCAACCCAAAAACAACAACGCAAATCCATTCTATAACAACAAACACAGTAAAGATCACAGAAAGGTTATATGTGCTTGCATCGCTCCTCCACGTAACTTCAACACCCAAGACTCTTCCGCCATTCAATTCAATGGTTCATCCAAATCAGAACAATTAAGCACAGTGAGGGATCATGAGGACGATTCTGATGTTCTTATTGAGTGTAGAGATGTCTACAAGTCTTTTGGGGAAAAGAAAATCTTAAATGGTGTCAGCTTCAAGATCAGGCATGGTGAAGCTGTTGGAATAATTGGTCCCTCTGGGACTGGCAAATCGACAATTTTGAAGATTATTGCAGGACTTCTTGCTCCAGACAAGGGAGAAGTTTATATTCGAGGTAGAAAGCGAGGTGGTTTGATAAGTGATGACGAGATATCAGGTCTTCGGATTGGATTAGTGTTCCAAAGTGCAGCACTTTTTGATTCTTTAACCGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCAAGCATGCCTGAGGAACAGATATCAGCGCTTGTCAAGGAAACCTTGGCTGCAGTTGGTTTGAAGGGAGTTGAGGAGCGACTTCCTTCTGAGTTATCAGGCGGAATGAAAAAGCGAGTTGCTTTAGCTCGATCTATTATTTTTGACACCACAAAGGATTCAATAGAACCGGAGGTGCTCTTGTATGACGAACCAACAGCTGGACTTGATCCCATTGCATCTACTGTTGTCGAGGATCTGATTCGCTCTGTGCACATAAAAGGACGAGATGCACTTGGAAAACCTGGAAATATTACATCTTACGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCTATTGATAGGTTGTTGTTTTTACACAAGGGAAAGCTTGTTTGGGAAGGAATGACTCATGAATTTACCACTTCAACGAATCCAATTGTTCAGCAGTTTGCATCTGGGAGCCTAGATGGTCCTATCAAATATTAG 1050 0.4143 MVSLSTNPFFTLTAQKTSPSTRFQPKNNNANPFYNNKHSKDHRKVICACIAPPRNFNTQDSSAIQFNGSSKSEQLSTVRDHEDDSDVLIECRDVYKSFGEKKILNGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLLAPDKGEVYIRGRKRGGLISDDEISGLRIGLVFQSAALFDSLTVRENVGFLLYEHSSMPEEQISALVKETLAAVGLKGVEERLPSELSGGMKKRVALARSIIFDTTKDSIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGRDALGKPGNITSYVVVTHQHSTIKRAIDRLLFLHKGKLVWEGMTHEFTTSTNPIVQQFASGSLDGPIKY 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02399 349 SMART AAA_5 113 317 IPR003593 GO:0016887
Trre13g02399 349 Gene3D - 75 341 IPR027417 -
Trre13g02399 349 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 89 340 IPR003439 GO:0005524
Trre13g02399 349 CDD ABC_Org_Solvent_Resistant 89 338 - -
Trre13g02399 349 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 9 349 - -
Trre13g02399 349 ProSitePatterns ABC transporters family signature. 224 238 IPR017871 GO:0005524|GO:0016887
Trre13g02399 349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 330 IPR027417 -
Trre13g02399 349 Pfam ABC transporter 104 259 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02399 Trre-Chr13 21588510 21593874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02399 88 318 Calmodulin-binding Proteins AT2G36910 29.150 6.89e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02399 - - gmx:100789283 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02399 13 21588510 21593874 Trre13g02399 13 21588510 21593874 ECH