Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02391 ATGGATCAATTCGATTCTATCCCTCAAGAAGCAATGTGGCAAATGAACTTGAGGTCAAGTGAAACAATGGAATCCGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCTTATTACATCAGAACTGGTCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAATAGGAAGTTGGCTATTGCTACTGCACGGATGAAAGGCGAGTTTCCAGAAAGATTAGGGCAGCCAGAATGTCAGTACTATCTGAAAACGGGAACTTGCAAATTTGGAGCCACATGTAGGTTTCATCACCCTAAAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAACATTTTAGGCTATCCACTCCGCCCAAATGAGTCTGAATGTGCTTATTATTTAAGAACCGGTCAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAATAATATGGTACTTTCAATGAGGGGTTCCCCTGCTTATCCTACTGTCCAGTCTCCAACTACACCAGGACAGCAGTCATATGCGGCAGGAATTACAAATTGGTCTAGTTCATCCTATATTCCTAGTCCGAGGTGGCAAGGCCCTTCAAGTTATGCACCCTTAATTCTACCTCAAGGAATGGTTTCAGTGCCTGGGTGGAGTACATACAATGGTCAAATGGGATCAGACAGTCCACAACAAACAATGAGAAATGATCAAACTTATGGAACTTCTCACCAAGGTGACCCAGAAAATGCAGGACTCCAAGGGGCATATTCTCAATACCGTTCTGGATCTGTTCCAGTAGGATTCTATGCTTTGCAAAGGGAGAACATTTTTCCAGAGAGACCTGATCAGCCTGAATGCCAATTCTACATGAAGACCGGAGATTGCAAGTTTGGTGCAGTCTGTCGTTTTCACCATCCACGCGAGAGGACGGTTCCTGCCCCTGATTGTGTTTTGAGTCCCATTGGCCTTCCTTTGCGTCCTGGAGAACCTCTTTGTGTCTTCTATTCGCGGTATGGCATATGCAAATTTGGCCCAAGCTGCAAGTTTGATCACCCAATGGGAATCTTCACCTATAATGTACCTGCATCACCATTAGCTGATGCCTCAGGACGTCGTCTGTTAGGTTCTTCATCAGGAACTGCTGCATTAAGTTTATCATCAGAAGGACTTGTTGAGTCAGGCTCAGCAAAGCCAAGGAGGCTTTCACTATCAGAGACTAGACCAATTCCTTCTGGTGATGATAACATTGATGATGAGGGATAA 1260 0.4437 MDQFDSIPQEAMWQMNLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGIAGRVALNILGYPLRPNESECAYYLRTGQCKFGNTCKFHHPQPNNMVLSMRGSPAYPTVQSPTTPGQQSYAAGITNWSSSSYIPSPRWQGPSSYAPLILPQGMVSVPGWSTYNGQMGSDSPQQTMRNDQTYGTSHQGDPENAGLQGAYSQYRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERTVPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNVPASPLADASGRRLLGSSSGTAALSLSSEGLVESGSAKPRRLSLSETRPIPSGDDNIDDEG 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02391 419 Gene3D - 277 361 - -
Trre13g02391 419 Gene3D - 30 113 - -
Trre13g02391 419 ProSiteProfiles Zinc finger C3H1-type profile. 76 104 IPR000571 GO:0046872
Trre13g02391 419 Gene3D - 120 168 - -
Trre13g02391 419 ProSiteProfiles Zinc finger C3H1-type profile. 32 59 IPR000571 GO:0046872
Trre13g02391 419 PANTHER PROTEIN PHOSPHATASE RELATED 10 373 - -
Trre13g02391 419 SUPERFAMILY CCCH zinc finger 282 307 IPR036855 GO:0046872
Trre13g02391 419 FunFam CCCH type zinc finger protein 277 362 - -
Trre13g02391 419 ProSiteProfiles Zinc finger C3H1-type profile. 325 353 IPR000571 GO:0046872
Trre13g02391 419 SUPERFAMILY CCCH zinc finger 328 352 IPR036855 GO:0046872
Trre13g02391 419 ProSiteProfiles Zinc finger C3H1-type profile. 122 150 IPR000571 GO:0046872
Trre13g02391 419 FunFam Zinc finger nuclease 2 30 107 - -
Trre13g02391 419 SMART c3hfinal6 76 103 IPR000571 GO:0046872
Trre13g02391 419 SMART c3hfinal6 279 306 IPR000571 GO:0046872
Trre13g02391 419 SMART c3hfinal6 325 352 IPR000571 GO:0046872
Trre13g02391 419 SMART c3hfinal6 31 58 IPR000571 GO:0046872
Trre13g02391 419 SMART c3hfinal6 122 149 IPR000571 GO:0046872
Trre13g02391 419 SUPERFAMILY CCCH zinc finger 36 59 IPR036855 GO:0046872
Trre13g02391 419 SUPERFAMILY CCCH zinc finger 123 150 IPR036855 GO:0046872
Trre13g02391 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 33 58 IPR000571 GO:0046872
Trre13g02391 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 149 IPR000571 GO:0046872
Trre13g02391 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 281 306 IPR000571 GO:0046872
Trre13g02391 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 327 352 IPR000571 GO:0046872
Trre13g02391 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 78 103 IPR000571 GO:0046872
Trre13g02391 419 SUPERFAMILY CCCH zinc finger 80 105 IPR036855 GO:0046872
Trre13g02391 419 ProSiteProfiles Zinc finger C3H1-type profile. 279 307 IPR000571 GO:0046872
Trre13g02391 419 MobiDBLite consensus disorder prediction 384 419 - -
Trre13g02391 419 MobiDBLite consensus disorder prediction 220 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02391 Trre-Chr13 21519303 21524966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02391 12 417 C2H2 Transcription Factor Family AT3G02830 62.470 3.77e-177 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre13g02391 zf-CCCH 5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02391 - - gmx:100786261 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02391 13 21519303 21524966 Trre13g02391 13 21519303 21524966 ECH