Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02385 ATGGGTGTCATAGTGGAAGTTGAAAACGTTGATGAAGACGACGCCGTTTTGATTCCACCATCCAATTTTTCCATGGTTGAAGATTGCATTTACCGATCTAGTCTTCCTCAACCTTCCAATTTTCCTTTCCTTCAAACCCTTAACCTTCGTTCAATCATATACTTGTGTCCTGAACCCTATCCAGAAGAGAATTTGGAGTTTCTAAAGTCACAGAATATTCGCTTGTTTCAATTTGGAATTGAGGGGAAAACGGAAGTTTCCTTACCTGTTCTCAAGGATTCTATTATGGAGGCTTTGAAAGTTTTGATTGATGTGAGAAATCACCCTACTTTGATTCATTGCAAACGTGGAAAGCATAGAACAGGTTGCCTTGTCGGATGCTTCAGAAAGTTGCAGAATTGGTGTTTGTCTTCTGTGTTTGAGGAGTATCAGCGATTTGCCGGTGTTAAATCCAGGACAACGGATTTAACATTTATCGAGATGTTTGACGTCTTAAGTCTTAGGCAGTGTCTCTACAGCATCATCTACCAGTACCAAGGTGCTTCGAAGAAGCGCAGATTGATGTACCAAGATGAGAATTTACAGAAACCCCGGTTGACATCATTTTAG 609 0.4056 MGVIVEVENVDEDDAVLIPPSNFSMVEDCIYRSSLPQPSNFPFLQTLNLRSIIYLCPEPYPEENLEFLKSQNIRLFQFGIEGKTEVSLPVLKDSIMEALKVLIDVRNHPTLIHCKRGKHRTGCLVGCFRKLQNWCLSSVFEEYQRFAGVKSRTTDLTFIEMFDVLSLRQCLYSIIYQYQGASKKRRLMYQDENLQKPRLTSF 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02385 202 ProSitePatterns Tyrosine specific protein phosphatases active site. 112 122 IPR016130 GO:0016311|GO:0016791
Trre13g02385 202 Gene3D Protein tyrosine phosphatase superfamily 16 166 IPR029021 -
Trre13g02385 202 PANTHER TYROSINE-PROTEIN PHOSPHATASE 13 176 - -
Trre13g02385 202 FunFam probable tyrosine-protein phosphatase At1g05000 16 166 - -
Trre13g02385 202 CDD PFA-DSP_Siw14 17 163 - -
Trre13g02385 202 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 164 IPR029021 -
Trre13g02385 202 PRINTS Plant and fungal dual specificity phosphatase signature 90 104 IPR020428 GO:0016791
Trre13g02385 202 PRINTS Plant and fungal dual specificity phosphatase signature 17 34 IPR020428 GO:0016791
Trre13g02385 202 PRINTS Plant and fungal dual specificity phosphatase signature 54 67 IPR020428 GO:0016791
Trre13g02385 202 PRINTS Plant and fungal dual specificity phosphatase signature 73 87 IPR020428 GO:0016791
Trre13g02385 202 ProSiteProfiles Dual specificity protein phosphatase domain profile. 22 171 IPR020422 GO:0006470|GO:0008138
Trre13g02385 202 Pfam Tyrosine phosphatase family 17 164 IPR004861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02385 Trre-Chr13 21459348 21460985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02385 7 198 Protein tyrosine phosphatase (PTP) family AT3G02800 68.394 3.36e-100 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02385 K18045 - gmx:100787713 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02385 13 21459348 21460985 Trre13g02385 13 21459348 21460985 ECH